PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G00480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30717.1 Da    PI: 9.6463
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G00480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.2e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRrng+lKKA+E+SvLCdaev  i+fs++gklyey++
  LPERR07G00480.1  9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVGAIVFSPKGKLYEYAT 59
                     79***********************************************86 PP
2K-box108.95.7e-3678173499
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +   s+e++ + ++++e++kLk++ie++q+ ++hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K +l++e+i+elqkke++lqeenkaL+k+
  LPERR07G00480.1  78 KALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKGHLMIESISELQKKERSLQEENKALQKE 171
                      556667888899********************************************************************************99 PP

            K-box  98 le 99 
                      l 
  LPERR07G00480.1 172 LV 173
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-34288IPR002100Transcription factor, MADS-box
CDDcd002657.65E-41276No hitNo description
PRINTSPR004045.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.53188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVGAIVFSP KGKLYEYATD  60
NRMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA KIETIQKCHK HLMGEDLESL  120
NLKELQQLEQ QLESSLKHIR SRKGHLMIES ISELQKKERS LQEENKALQK ELVERQKSVR  180
GQQQVVQWDQ TQAQVQAQPQ AQTQAQTSSS SSSMLRDQQA LLTQQNICYP PVMMGERSDA  240
AAAATAAVQG QVQLRMGGLP PWMLSHLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22174173MEF2 CHIMERA
6byy_B4e-22174173MEF2 CHIMERA
6byy_C4e-22174173MEF2 CHIMERA
6byy_D4e-22174173MEF2 CHIMERA
6bz1_A4e-22174173MEF2 CHIMERA
6bz1_B4e-22174173MEF2 CHIMERA
6bz1_C4e-22174173MEF2 CHIMERA
6bz1_D4e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G00480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033250.0AB003325.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E31864.
GenBankAY5519200.0AY551920.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS215 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657400.11e-151PREDICTED: MADS-box transcription factor 15
SwissprotQ6Q9I21e-152MAD15_ORYSJ; MADS-box transcription factor 15
TrEMBLA0A0D9WUP00.0A0A0D9WUP0_9ORYZ; Uncharacterized protein
STRINGLPERR07G00480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Cai Q, et al.
    [PAEs in composts of municipal sludge and rice straw].
    Ying Yong Sheng Tai Xue Bao, 2003. 14(11): p. 1993-6
    [PMID:14997664]
  2. Wang K, et al.
    DEP and AFO regulate reproductive habit in rice.
    PLoS Genet., 2010. 6(1): p. e1000818
    [PMID:20107517]
  3. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  4. Ramanujam R,Yishi X,Liu H,Naqvi NI
    Structure-function analysis of Rgs1 in Magnaporthe oryzae: role of DEP domains in subcellular targeting.
    PLoS ONE, 2012. 7(7): p. e41084
    [PMID:22927898]
  5. Ang TN,Ngoh GC,Chua AS,Lee MG
    Elucidation of the effect of ionic liquid pretreatment on rice husk via structural analyses.
    Biotechnol Biofuels, 2012. 5(1): p. 67
    [PMID:22958710]
  6. Zhang G,Huang K,Jiang X,Huang D,Yang Y
    Acetylation of rice straw for thermoplastic applications.
    Carbohydr Polym, 2013. 96(1): p. 218-26
    [PMID:23688473]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Hu S, et al.
    A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.
    Rice (N Y), 2013. 6(1): p. 24
    [PMID:24280027]
  9. Ji Y, et al.
    A comprehensive assessment of human exposure to phthalates from environmental media and food in Tianjin, China.
    J. Hazard. Mater., 2014. 279: p. 133-40
    [PMID:25051237]
  10. Huang Y, et al.
    Phthalates in Commercial Chinese Rice Wines: Concentrations and the Cumulative Risk Assessment to Adult Males in Shanghai.
    Biomed. Environ. Sci., 2014. 27(10): p. 819-23
    [PMID:25341819]
  11. Tamaki S, et al.
    FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(8): p. E901-10
    [PMID:25675495]
  12. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]