PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G23620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 442aa    MW: 48585.6 Da    PI: 5.3626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G23620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-1763107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  LPERR06G23620.1  63 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 107
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-1657111IPR009057Homeodomain-like
PROSITE profilePS5129422.05658112IPR017930Myb domain
TIGRFAMsTIGR015577.2E-1661110IPR006447Myb domain, plants
SMARTSM007171.6E-1462110IPR001005SANT/Myb domain
PfamPF002491.2E-1463106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1063103IPR009057Homeodomain-like
CDDcd001671.20E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSMARLEEK DVLDSSDLAT NRGVSLDVVK SPLINDATAL QHKEGMEECP VKVRKPYTIT  60
KQREKWTEEE HEKFLEALKL YGRSWRQIQE HIGTKTAVQI RSHAQKFFSK VVREPGANNV  120
IEIPPPRPKR KPLHPYPRKC ANSGTDANPA TGQTKLAPVS SSSGSDQENG SPVSVLSAMQ  180
SDAFGSSISN PSTRCTSPTS SDDGNNILTF TSGEENAPCE QIGIDQSHKE VDQDGKDTDM  240
SEEDSSEEVQ ETSLKLFGKT VVVPDPRKRG SSDPKHENEE QISHPSKEEM ISAYSVEEVP  300
AAHSAPNGWL LSYNSFPFHF GESMDARIAA YQMWWAYYGF AHISHPRGVS TVVQQTEGSD  360
ESDSGKSTSA ESSSDSGDNV QTAAPQNYSV VESLGAIHVR QSSTSFELKP SANSAFVRVK  420
PSNSRDEEVT KGFVPYKRCK IE
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G23620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656522.10.0PREDICTED: protein REVEILLE 1-like
SwissprotF4K5X63e-44RVE2_ARATH; Protein REVEILLE 2
TrEMBLA0A0D9WUD20.0A0A0D9WUD2_9ORYZ; Uncharacterized protein
STRINGLPERR06G23620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.15e-37MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]