PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G23420.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 270aa MW: 30662 Da PI: 7.9933

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G23420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.6	9.5e-44	4	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya......tgkrknratksgyWkatgkd 89 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp+ ++ +e+ewyfF++rd + a g r++r+t++g+Wkatg+d LPERR06G23420.1 4 LPGFRFHPTEEELLEFYLKQVVHGKKLKF-DIIPTVHLYRHDPRELPSLARIGEREWYFFVPRDGAGArkngssAGGRPSRTTEHGFWKATGSD 96 69************************9.99***********8888899*****98877443443456************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl LPERR06G23420.1 97 RAVRCAadPKKLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 137 98777888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.528	3	160	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-51	3	160	IPR003441	NAC domain
Pfam	PF02365	3.0E-24	5	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
METLPGFRFH PTEEELLEFY LKQVVHGKKL KFDIIPTVHL YRHDPRELPS LARIGEREWY 60 FFVPRDGAGA RKNGSSAGGR PSRTTEHGFW KATGSDRAVR CAADPKKLIG LKKTLVYYEG 120 RAPRGTKTDW VMNEYRLPDA AGEDHRPHQE DVVLCKVYRK AVSLKELEQR VAMEELARCT 180 SASQNAGSPV DSSSICSSAE YGVMMKKEAV VQVDEAAAHE LVRPAMMRLP ELEVAKISGL 240 EWMQEPFLTQ LRSPWMESWS PYYASSVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-41	5	166	22	174	NAC domain-containing protein 19
3swm_B	6e-41	5	166	22	174	NAC domain-containing protein 19
3swm_C	6e-41	5	166	22	174	NAC domain-containing protein 19
3swm_D	6e-41	5	166	22	174	NAC domain-containing protein 19
3swp_A	6e-41	5	166	22	174	NAC domain-containing protein 19
3swp_B	6e-41	5	166	22	174	NAC domain-containing protein 19
3swp_C	6e-41	5	166	22	174	NAC domain-containing protein 19
3swp_D	6e-41	5	166	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G23420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643570.1	1e-140	NAC domain-containing protein 22-like
Swissprot	Q10S65	1e-95	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0D9WUB0	0.0	A0A0D9WUB0_9ORYZ; Uncharacterized protein
STRING	LPERR06G23420.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-79	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]