PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G23220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 130aa MW: 14430.2 Da PI: 6.5282 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.8 | 3.2e-15 | 81 | 129 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +++r++r+++NRe+A rsR+RK+a++eeLe++v L N Lkk+ +e LPERR06G23220.1 81 DDRRTIRMMRNRESALRSRARKRAYVEELEKEVRRLVDDNLNLKKQCKE 129 589*************************************888877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-13 | 79 | 129 | No hit | No description |
SMART | SM00338 | 2.0E-4 | 79 | 129 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 81 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.5E-13 | 82 | 129 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-11 | 83 | 129 | No hit | No description |
CDD | cd14707 | 9.75E-16 | 83 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MENYHQFQMA AAWPREPDSP QLSIMSGCSS LFSISTLRDD DGGGGGGGGH AIPATPVSLA 60 VIATGDEVEM EVRQQSGGSG DDRRTIRMMR NRESALRSRA RKRAYVEELE KEVRRLVDDN 120 LNLKKQCKEY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G23220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243144 | 1e-83 | AK243144.1 Oryza sativa Japonica Group cDNA, clone: J100032B03, full insert sequence. | |||
GenBank | CT834745 | 1e-83 | CT834745.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103J07, full insert sequence. | |||
GenBank | CT834746 | 1e-83 | CT834746.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110D03, full insert sequence. | |||
GenBank | CT834747 | 1e-83 | CT834747.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126G01, full insert sequence. | |||
GenBank | CT834748 | 1e-83 | CT834748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA223H09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642449.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015643092.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015643093.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015643094.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015643106.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015643107.1 | 2e-69 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
TrEMBL | A0A0D9WU83 | 1e-91 | A0A0D9WU83_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G23220.1 | 2e-92 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 8e-07 | ABA-responsive element binding protein 3 |