PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G22820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family DBB
Protein Properties Length: 311aa    MW: 32385.2 Da    PI: 4.6465
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G22820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.11.1e-05447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ ++  ++   C  ++  lC  C    H+       H++ pl
  LPERR06G22820.1  4 QCDVCGVSPAAVLCCADEAALCSACDRRVHRAnrlagkHRRLPL 47
                     7*****999*********************76889999998775 PP
2zf-B_box26.11.7e-086398337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                     +++C+ + ek+   fC +++  lC+dC + +H   H
  LPERR06G22820.1 63 PPMCDVCREKRGLVFCVEDRAILCPDCDDPIHAAnH 98
                     689****************************95564 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8147IPR000315B-box-type zinc finger
CDDcd000212.41E-6347No hitNo description
PROSITE profilePS501199.18661108IPR000315B-box-type zinc finger
SMARTSM003362.4E-1461108IPR000315B-box-type zinc finger
CDDcd000214.32E-764108No hitNo description
PfamPF006431.0E-56498IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRVQCDVCGV SPAAVLCCAD EAALCSACDR RVHRANRLAG KHRRLPLIHP SDSGAGESGG  60
AAPPMCDVCR EKRGLVFCVE DRAILCPDCD DPIHAANHLT AKHTRFLLVG AKLSAADVAD  120
DDDDGEDGEH AIPSSDCSSD DAIAAAAATK EDQSSSVSAA VDAGGGGGGG SSISDYLTTI  180
CPGWQVEDLL LPDDGDVFVS NAGVGVGAGV GLGKEKDGER VPFIDADLFD AVGAGRTEKK  240
GGGAWAPHVP QLPAWCLDDV AAAMATPPPV KPAKQGHVRE RQYWKDVDAF AVPEFSPPAK  300
RARPSQQYWC F
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G22820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641370.11e-99B-box zinc finger protein 20 isoform X1
TrEMBLA0A0D9WU340.0A0A0D9WU34_9ORYZ; Uncharacterized protein
STRINGLPERR06G22820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-35salt tolerance homolog2