PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G21020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 765aa MW: 83357.8 Da PI: 7.3571 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7e-24 | 194 | 295 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ LPERR06G21020.1 194 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 283 89****************************996555555..8999*********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ LPERR06G21020.1 284 DNGDLCVGIRRA 295 78888****996 PP | |||||||
2 | Auxin_resp | 112.7 | 3.5e-37 | 357 | 440 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ LPERR06G21020.1 357 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 440 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-37 | 184 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-28 | 190 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-20 | 193 | 294 | No hit | No description |
SMART | SM01019 | 4.8E-21 | 194 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-22 | 194 | 295 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.971 | 194 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-32 | 357 | 440 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.301 | 679 | 762 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MSAAVWGNLE AAAHLRERQK QQSRAEREER VAEQGKIELC CRDCPFKFII LQAADQITEE 60 DFYKMITFVD SAAKERERES TDNKCLDPQL WHACAGGMVQ MPPVSSKVYY FPQGHAEHAQ 120 AVDFPSGAGR VPPLILCRVA GVRFMADPDT DEVFAKIRLV PVRANDGAAD DGGIGAGTDA 180 AAAAAAAEEK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH 240 GVVWKFRHIY RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTDNGDLCV GIRRAKKGGV 300 GCPELPPPIS PAAANYGGGG FSMFLRGGDD DCSNNKMSPA ARGKIRARVR PEEVVEAANL 360 AVSGQPFEVV YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV 420 SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK 480 LCVPLYPELP IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLTDLHL 540 NKLQSSLSPH GFHQLDHGIQ PRIAAGLIIG HPTARDDISC LLTIGTPQNN KKSDGKKAPA 600 QLMLFGKPIL TEQQISLGDA APMAVRKSSS DGDAEKTVNK SNSDVSSPRS NLNGATDNMS 660 CGGVPLCQDN KVLDVGLETG HCKVFMQSED VGRTLDLSVV SSYEELYRRL ADMFGIEKAE 720 LMSHVFYRDA AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-79 | 67 | 461 | 32 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G21020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071299 | 0.0 | AB071299.1 Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644137.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015644138.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0D9WTE6 | 0.0 | A0A0D9WTE6_9ORYZ; Auxin response factor | ||||
STRING | LPERR06G21020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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