PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G20610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 412aa MW: 44336.6 Da PI: 6.5152 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l LPERR06G20610.1 14 KGPWTQGEDKLLVEHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 61 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 42.9 | 1.1e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++ E+ +++++++lG++ W++I++++ gRt++++k++w++ LPERR06G20610.1 67 KGPFSPLEERTILRLHALLGNK-WARISSYLR-GRTDNEIKNYWNT 110 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.074 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-11 | 16 | 61 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 29 | 38 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 22.772 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.63E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MARSGGEGGG GLKKGPWTQG EDKLLVEHVR RHGEGNWNAV RRETGLQRCG KSCRLRWANH 60 LRPNLRKGPF SPLEERTILR LHALLGNKWA RISSYLRGRT DNEIKNYWNT RMKRRVRAGM 120 AVYPPEVERE IAELRAQNAN LSSAPAVDGD GNVCIPPSLL LDISSSPFAF PSPATASGLG 180 SPVINQNYPL LNQMSLLHLA NNQQQPAFHH DAAGHGGGGG FVSSGLPPLP TRPAREIHSN 240 QFEITVASGG GGGDDDGLLD SLLLLGDDGL LPPPAPRPNT AMLRVGSMPE LMYREPSSRI 300 VIHGGGGGDS DVTSQYPPGE EDPHFGGRWD FVFDDVKPSK RKAASAVEED ISGMFGINPG 360 SIPGEWFAAG AGSSAPSPGP SSVVTDDDFS LEMQQFMSSL PLLPSEEHQW NT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G20610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111697 | 1e-95 | AK111697.1 Oryza sativa Japonica Group cDNA clone:J023004F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641592.1 | 1e-170 | uncharacterized protein LOC4341850 | ||||
TrEMBL | A0A0D9WT99 | 0.0 | A0A0D9WT99_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G20610.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-55 | myb domain protein 101 |