PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25248.5 Da    PI: 5.6686
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.6e-24958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     kri+ k  rq tf+kRr+g+lKKA+EL vLCda+v v+ifs +gkl++y 
  LPERR06G20000.1  9 KRIDKKASRQATFCKRRAGLLKKAHELAVLCDAQVGVVIFSGNGKLFDYG 58
                     79*********************************************995 PP
2K-box57.46.3e-2081171998
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +e+    ++  e+++L++e ++L+ ++R+  GedL+s  ++ eL qL+ qLe++l+k+R++K+el+ +q+eel++ ++ ++++n+ L +++
  LPERR06G20000.1  81 QETDRDDQMFMEITRLRNEKDQLEASLRRQTGEDLSSVaTVDELSQLQLQLESALTKVRQRKDELMNQQLEELRHSQQTVHDQNNFLCRMI 171
                      44555677999**************************84689********************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.871161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.03E-38272No hitNo description
SuperFamilySSF554553.53E-28278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-2082171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.35686177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIEIKR IDKKASRQAT FCKRRAGLLK KAHELAVLCD AQVGVVIFSG NGKLFDYGSP  60
SLSLMELIHR YEITTRNTRL QETDRDDQMF MEITRLRNEK DQLEASLRRQ TGEDLSSVAT  120
VDELSQLQLQ LESALTKVRQ RKDELMNQQL EELRHSQQTV HDQNNFLCRM ISGNWQSSVS  180
GEAPAMEALT AAAVEAEAFG HNCFFPEEED DGLALQLWPL HN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-17162162MEF2 CHIMERA
6bz1_B9e-17162162MEF2 CHIMERA
6bz1_C9e-17162162MEF2 CHIMERA
6bz1_D9e-17162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882176.11e-89MADS-box transcription factor 30 isoform X6
RefseqXP_025882177.11e-90MADS-box transcription factor 30 isoform X7
SwissprotQ655V42e-92MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0D9WT161e-164A0A0D9WT16_9ORYZ; Uncharacterized protein
STRINGLPERR06G20000.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-38MIKC_MADS family protein