PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G19840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 349aa    MW: 38230.4 Da    PI: 9.4785
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G19840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.21.9e-3349103155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  LPERR06G19840.1  49 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 103
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.87646106IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-3246104IPR009057Homeodomain-like
SuperFamilySSF466891.79E-1648105IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-2449104IPR006447Myb domain, plants
PfamPF002492.0E-751101IPR001005SANT/Myb domain
PfamPF143795.9E-24142188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFPSSSSSSS NPKKQQQQQV VGGGAAVSSN DRPLCVQGDS GLVLTTDPKP RLRWTVELHD  60
RFVDAVTQLG GPDKATPKTI MRVMGVKGLT LYHLKSHLQK FRLGKQHKDF NDHSAKDAMD  120
MQRNAASSSS GIMGRSMNDR NVHVNDALRM KMEVQRRFHE QLEVQKHLQL RVEAQGKYMQ  180
SILEKAYQAL GSGDCATWPA GYKSLGNQAI LDIGTSMSFP SLQDLQLYGG SHLDLQQQQP  240
MEMRPMDHSF LEFNEISCVG SVGKIKSPSH YSSTGKNPMV WSAGADEQAT KMMEAGVMVD  300
AMITMSGGDS MGSKGFEGQN SKLDMRSPVG SERISNPVVG AKSRNISYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G19840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195880.0AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693963.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SAK52e-81APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0D9WSZ70.0A0A0D9WSZ7_9ORYZ; Uncharacterized protein
STRINGLPERR06G19840.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.24e-83G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]