PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G18380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 32983.1 Da PI: 8.3163 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v ++G ++W++I r+++ gR++k+c++rw + LPERR06G18380.1 14 RGPWSPEEDEALRRLVDRHGARNWTAIGREIP-GRSGKSCRLRWCNQ 59 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar + gRt++ +k++w+ LPERR06G18380.1 66 RRPFTPEEDATILRAHARLGNR-WAAIARLLH-GRTDNAVKNHWN 108 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.062 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-16 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-18 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.66E-16 | 16 | 58 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 66 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.057 | 66 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGGGGAEAEC DRIRGPWSPE EDEALRRLVD RHGARNWTAI GREIPGRSGK SCRLRWCNQL 60 SPQVERRPFT PEEDATILRA HARLGNRWAA IARLLHGRTD NAVKNHWNCS LKRKLAVATA 120 ASASPTPDVA VVERPCKRMS PSPDSPSSGS GSGSSDRSDL SHGGASGSGG FGQIFRPVAR 180 AGAFEPVVDC AISRRQEEDP LTSLSLSLPG TTMDQRFNHD SAHSHFQELP SSPSPPPPAP 240 PVAIAPTTAA QYPFTPEFAA AMQEMIRAEV HKYMASVGVR AGCGDADVHM PQLMAGVMRA 300 AAERMMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-38 | 11 | 115 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G18380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105817 | 1e-134 | AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence. | |||
GenBank | AK121564 | 1e-134 | AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence. | |||
GenBank | AP003573 | 1e-134 | AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01. | |||
GenBank | AP014962 | 1e-134 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406298 | 1e-134 | CU406298.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110G10, full insert sequence. | |||
GenBank | CU406777 | 1e-134 | CU406777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108L17, full insert sequence. | |||
GenBank | CU406904 | 1e-134 | CU406904.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641187.1 | 1e-152 | transcription factor MYB77 | ||||
TrEMBL | A0A0D9WSF0 | 0.0 | A0A0D9WSF0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G18380.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-57 | myb domain protein r1 |