PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G17280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 331aa    MW: 36135.9 Da    PI: 5.2487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G17280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.92.2e-3347101155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl
  LPERR06G17280.1  47 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101
                      58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.70444104IPR017930Myb domain
SuperFamilySSF466897.88E-1846101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-3246102IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2648102IPR006447Myb domain, plants
PfamPF002492.2E-849100IPR001005SANT/Myb domain
PfamPF143792.2E-22134179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYEPKPFSST APVQNDSVPH NQQIERISDN VVSSSGGNIS NNNFATRQRL RWTDDLHDRF  60
VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSEKKEL  120
GDLLADIESS SGLEIGEALK LQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQRL  180
SGVLGEPGKL SALGPTPGEQ YQDSNKTDPS TPVPTSESPI RDKAASGFFK TLSSHDDCLS  240
SGHEPLTPDS SCPASSPLES PRASKRIRVG SGLDHHGNDE FAFSQNVLEP SSCSDFRQES  300
SVLSSGSPHF DSLESLNADE NGFTNGSGSD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2447104158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G17280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717310.0AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656238.10.0PREDICTED: protein PHR1-LIKE 1
SwissprotQ9SJW02e-99PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0D9WS100.0A0A0D9WS10_9ORYZ; Uncharacterized protein
STRINGLPERR06G17280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-84G2-like family protein