PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G14930.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

BES1

Protein Properties

Length: 352aa MW: 37160 Da PI: 8.0648

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G14930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	207.1	4.8e-64	12	161	2	149
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 g++r ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg++p+ e+++ +g+sas sp+ss LPERR06G14930.1 12 GGTRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCRPPpaERPDPIGRSASPSPCSS 105 789*********************************************************************9999************ PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149 +q +sp +sy++sp+sssfps+ s+++i+l + +sl+p+l++l+l+ss LPERR06G14930.1 106 YQ--------PSPQASYNPSPASSSFPSSGSSSHITLGGNnliggvegSSLIPWLKTLPLSSSY 161 ........99********************999988899999999*****99986664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.3E-69	12	155	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MTNGAGGGGG LGGTRVPTWR ERENNRRRER RRRAIAAKIY AGLRAYGNYN LPKHCDNNEV 60 LKALCNEAGW TVEPDGTTYR KGCRPPPAER PDPIGRSASP SPCSSYQPSP QASYNPSPAS 120 SSFPSSGSSS HITLGGNNLI GGVEGSSLIP WLKTLPLSSS YASSSKFPQL HHLYFNGGSI 180 SAPVTPPSSS PTRTPRIRTD WENASVQPPW ASANYTSLPN STPPSPGHQI APDPAWLAGF 240 QISSAGPSSP TYNLVSPNPF GIFKEAIAST SRVCTPGQSG TCSPVMGGMP AHHDVQMVDG 300 APDDFAFGSS SNGNNESPGL VKAWEGERIH EECASDELEL TLGSSKTRAD PS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MTNGAGGGGG LGGTRVPTWR ERENNRRRER RRRAIAAKIY AGLRAYGNYN LPKHCDNNEV  60
LKALCNEAGW TVEPDGTTYR KGCRPPPAER PDPIGRSASP SPCSSYQPSP QASYNPSPAS  120
SSFPSSGSSS HITLGGNNLI GGVEGSSLIP WLKTLPLSSS YASSSKFPQL HHLYFNGGSI  180
SAPVTPPSSS PTRTPRIRTD WENASVQPPW ASANYTSLPN STPPSPGHQI APDPAWLAGF  240
QISSAGPSSP TYNLVSPNPF GIFKEAIAST SRVCTPGQSG TCSPVMGGMP AHHDVQMVDG  300
APDDFAFGSS SNGNNESPGL VKAWEGERIH EECASDELEL TLGSSKTRAD PS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-25	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-25	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-25	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-25	15	89	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G14930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	0.0	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641160.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A0D9WR43	0.0	A0A0D9WR43_9ORYZ; Uncharacterized protein
STRING	LPERR06G14930.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-62	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]