PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G14620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 532aa    MW: 57051.7 Da    PI: 6.1815
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G14620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31122175255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  LPERR06G14620.1 122 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 175
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601118178IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-29118176IPR009057Homeodomain-like
SuperFamilySSF466895.2E-14121176IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-22122177IPR006447Myb domain, plants
PfamPF002499.3E-9123174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGEVKEKEVV EIFEHDHDKI RSPENSVPPA AMVLDLNEGF GKGSEEGEIG EDGEEDDDDD  60
DDDDDGGSTS EVAGGRSSSN NSSTNHNSGS NKDHDMNSSS SKADDGGDRV PTVRQYNRSK  120
LPRLRWTPDL HMAFVHAVER LGGQERATPK LVLQMMNVRG LSIAHVKSHL QMYRSKKLDH  180
ESGHERGAIS SVFSPMEFHM RRGGDHRFHH HDMFFQRAAA GAVAGVPFSS RLSHENGGGF  240
FASRNSGLPA EASRLYGLFQ RRQPASTMQT FDFKNSNSFR NQEWSFNQHT AARVVAAGAV  300
NDNGPAKGLI HEMIFRKDGK PMTSHLFDVR DAIACTRVTS ATTAAAAAGG GKDGAFDWVG  360
SSSSRPLSRT MSTGDYHLRW RGGAAVAGGN NTTSSDPVVA SEALGSLLER AKSAKAMEAM  420
RVETPAKMMT PADLQLSLSP NAGDQRASKK RKNIGSLLSE QEVDSDNKQQ PLSLSLSLRG  480
GSDDNGGDGG GECGGEDAGR LEEETTGSSS SSKKAALGLS TLDLTMSIKA LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-18123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18123177357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G14620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736060.0AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641454.10.0uncharacterized protein LOC4341235 isoform X2
TrEMBLA0A0D9WR120.0A0A0D9WR12_9ORYZ; Uncharacterized protein
STRINGLPERR06G14620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.15e-34G2-like family protein