PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G14120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39612.8 Da PI: 7.0763 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.8e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ LPERR06G14120.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKA 102 69****************************.9***************943444442456*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +g++ktLvfy grap+g+ktdW+mheyrl LPERR06G14120.1 103 IFLGNACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139 ***99999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-59 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.118 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-28 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNACR IGMRKTLVFY 120 VGRAPHGKKT DWIMHEYRLD QDNVEVQEDG WVVCRVFMKK NYLQRGLNPE TDQIAAADDD 180 ELLHHRPFPP PPPLAAAIDH KHNHLAGHHL MQPQPHHHNH YDEFPSFDPS MQLPQLMSAD 240 QPPLLPSLGL DGGDCSNNLI KLTAAAAAAG AGVATDWSIL DKLLQSHQNL DQLFQGRVVA 300 GAASPAAAVA AMGPGHHQQH LMDQLGSGGG SSSSLQRLPL QYLGCEAGDQ LLRFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-50 | 8 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-50 | 8 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-50 | 8 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-50 | 8 | 165 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-50 | 8 | 165 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-50 | 8 | 165 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G14120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028186 | 0.0 | AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694042.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-134 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0D9WQV7 | 0.0 | A0A0D9WQV7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G14120.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-87 | NAC family protein |
Publications ? help Back to Top | |||
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