PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G12880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 514aa MW: 55375 Da PI: 4.7939 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.4 | 1.4e-27 | 179 | 233 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ LPERR06G12880.1 179 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 233 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.924 | 176 | 235 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.67E-18 | 177 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 177 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-26 | 179 | 233 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-8 | 182 | 231 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MLAVSPAMCP DVAEDRARVV AGDAVGMEVV GDMEFDFSVD DIDFGDFFLR LEDGDVLPDL 60 EAVDPAEIFT DFEAIATSGG EEFQEDQEVP TVELLAPVED VGVVDVVVGE EHREFVAEAA 120 GEEEKVGCNQ DDEAEEANAD VGGDAAVVAE AKSSSTTSSS QEAESRHKSS SKSSQGKKKA 180 KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY RSHRKHMLAR 240 EAETASWTQR RQIYAAGGGA VAKRPESNVW AVPTIGFPPP PPLPPPPSPM QHFARPLHVW 300 GHPTVDSPRV PMWPPRHLVP RCPALPLVPP PPPSDPAFWH HPYMRGQAHM PTQGTPCMAM 360 PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPGQAHM PTQGTPCMAM 420 PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPSSESI DAAIGDVLTK 480 PWLPLPLGLK PPSLDSVMGE LQRQGVANVP PAGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 176 | 231 | 2 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G12880.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644244.1 | 0.0 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 0.0 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A0D9WQG0 | 0.0 | A0A0D9WQG0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G12880.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-46 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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