PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G12880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 514aa    MW: 55375 Da    PI: 4.7939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.4e-27179233156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  LPERR06G12880.1 179 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 233
                      6799*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924176235IPR017930Myb domain
SuperFamilySSF466891.67E-18177236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27177236IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26179233IPR006447Myb domain, plants
PfamPF002497.4E-8182231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MLAVSPAMCP DVAEDRARVV AGDAVGMEVV GDMEFDFSVD DIDFGDFFLR LEDGDVLPDL  60
EAVDPAEIFT DFEAIATSGG EEFQEDQEVP TVELLAPVED VGVVDVVVGE EHREFVAEAA  120
GEEEKVGCNQ DDEAEEANAD VGGDAAVVAE AKSSSTTSSS QEAESRHKSS SKSSQGKKKA  180
KVDWTPELHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY RSHRKHMLAR  240
EAETASWTQR RQIYAAGGGA VAKRPESNVW AVPTIGFPPP PPLPPPPSPM QHFARPLHVW  300
GHPTVDSPRV PMWPPRHLVP RCPALPLVPP PPPSDPAFWH HPYMRGQAHM PTQGTPCMAM  360
PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPGQAHM PTQGTPCMAM  420
PMPAARFPAP PVPGVVPCPM YRPLTPPALV SKNQQDAQLQ LQAQPSSESI DAAIGDVLTK  480
PWLPLPLGLK PPSLDSVMGE LQRQGVANVP PAGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16176231257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G12880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644244.10.0probable transcription factor GLK1
SwissprotQ5Z5I40.0GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A0D9WQG00.0A0A0D9WQG0_9ORYZ; Uncharacterized protein
STRINGLPERR06G12880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-46GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]