PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G12320.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 254aa MW: 27816.6 Da PI: 10.0955

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G12320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.6	2.6e-11	54	150	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.dida.fyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +fqr w Dei+lL ++++ ++++g ps d+ a + + + + + ++ ++r L+ ++ +++ s + ++ k+hd i++lsk LPERR06G12320.1 54 AFQRTWAPADEISLLEAVVSHRQRHGRIPSPdDLAAaLRGSLLTTYGRRLDADAVSLRLRYLRSRYIAAWRR-ISFRGVVPVKDHDLRIYKLSK 146 69***********************77774655415567888889999999***************.5566678899******* PP DUF573 94 kiWg 97 +iW+ LPERR06G12320.1 147 SIWE 150 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.5E-15	55	150	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSGVRRQPPP PPSLDIGEEG AAATDDEGSD SYSDGSFSSG SGSAGGGATK KPAAFQRTWA 60 PADEISLLEA VVSHRQRHGR IPSPDDLAAA LRGSLLTTYG RRLDADAVSL RLRYLRSRYI 120 AAWRRISFRG VVPVKDHDLR IYKLSKSIWE EATRDQRISK KPSVARNGPP REPRELEALY 180 PCLSAVVDAV EASRPCAVVG MLRRSFGRIG DEKAAQLEAK ARKQRLAEVK VGIRLAMLRK 240 EVSDTLLELI ESND

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G12320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641435.1	8e-74	uncharacterized protein LOC4341103
TrEMBL	A0A0D9WQ81	0.0	A0A0D9WQ81_9ORYZ; Uncharacterized protein
STRING	LPERR06G12320.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14023	5	5