PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G11990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 368aa    MW: 40984.1 Da    PI: 7.2396
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G11990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-081375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  LPERR06G11990.1 13 RFTQAEVAEMESRLQQlnNAIPHRSVIQALADKFtasparagkvPVQPKQVWNWFQNRRYSHR 75
                     69*************776999*********************999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0048781IPR001356Homeobox domain
SuperFamilySSF466892.61E-111279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-71280IPR009057Homeodomain-like
CDDcd000860.001181378No hitNo description
PROSITE profilePS5007110.0091377IPR001356Homeobox domain
PfamPF000465.3E-61375IPR001356Homeobox domain
PfamPF167192.6E-41125252IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMESRLQQLN NAIPHRSVIQ ALADKFTASP ARAGKVPVQP  60
KQVWNWFQNR RYSHRSRNTR GPLLMQAKML PTGSDEQKVA PFRAMPSAAA LSGSPSGKSP  120
LESGQVEFEA KSARDGAWYD VAAFLSHRLF ESGDPEVRVR FSGFGAEEDE WINVRKCVRQ  180
RSLPCESTEC VAVLPGDLIL CFQEGKEQAL YFDARVLDAQ RRRHDVRGCR CRFLVRYDHD  240
HSEEIVPLRK VCRRPETDYR LQILHATRAA GVAKEAVVDL VSHNDKGSAE QKPQKQHKMM  300
DVNTDEVTMV SNPDQEEPTG KTVATLQAEP IKTPNDSASA SDVQMGEAQA GPKVESSDEV  360
EENKMKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-471232561134SHH1 SAWADEE
4iur_B4e-471232561134SHH1 SAWADEE
4iut_A4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-471232561134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G11990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1042820.0AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-126SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D9WQ370.0A0A0D9WQ37_9ORYZ; Uncharacterized protein
STRINGLPERR06G11990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-109sequence-specific DNA binding transcription factors;sequence-specific DNA binding