PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G11390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 32073.6 Da PI: 4.0999 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.2 | 1.3e-22 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratk..sgyWkatgkdke 91 lppG++F+P+d elv +yL ++++g++l+l+ +i ++d +++ Pw+L + + + +e +fF +++ k+ +g+ r++r+++ g+W+ + LPERR06G11390.1 8 LPPGLKFDPSDGELVGRYLLPRIQGNPLPLDGAILDADPLSSPPWRLLADHGRRGDEAFFFDEARAKNGKGSsRQKRTVEegGGFWQGQRMA-- 99 79****************************999**************8777777889******9999998543888876655889*966552.. PP NAM 92 vlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 v + + e + k +L f+ ++ +kg ++ Wvm ey++ LPERR06G11390.1 100 VDGErllvpdagGLEISWRKYVLSFF-ADGEKG-SSGWVMYEYAI 142 2222223356655555888899***9.455554.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-29 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.906 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAAPPDALPP GLKFDPSDGE LVGRYLLPRI QGNPLPLDGA ILDADPLSSP PWRLLADHGR 60 RGDEAFFFDE ARAKNGKGSS RQKRTVEEGG GFWQGQRMAV DGERLLVPDA GGLEISWRKY 120 VLSFFADGEK GSSGWVMYEY AITAPAELAS STTRLYRIRF SGYGKKRKRE PENQSSSHAS 180 RKTENALLQD LAPVPPLAAA DDDSISDSAD QGLMMDDYSL VFDSLPEIID VDELQSTLRE 240 FSAPDMFVSP QEAEADACAG AATSSADLGV AEIVDEDDLS CIDFDFDVDA ALAAWS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G11390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882797.1 | 8e-94 | NAC transcription factor 32 | ||||
TrEMBL | A0A0D9WPW5 | 0.0 | A0A0D9WPW5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G11390.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-13 | NAC domain containing protein 5 |