PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G10620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YC
Protein Properties Length: 425aa    MW: 47572.6 Da    PI: 4.327
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G10620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC85.46.1e-275106199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw+++   ie  +d+ +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+av++t+ +df
  LPERR06G10620.1   5 QMDEFWMDRqkdIEAIEDYSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAIRAWACAQSYNRCIILETDIAQAVASTESYDF 98 
                      68899*8655679********************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      lvd+  ++
  LPERR06G10620.1  99 LVDVLHKH 106
                      ***98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.07E-1614117IPR009072Histone-fold
PfamPF008081.6E-92890IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.9E-1929104IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAQQQMDEFW MDRQKDIEAI EDYSEHAIPM ARLKKIVSSQ KGNMMMTFDM PAFLSKMCEL  60
FVQELAIRAW ACAQSYNRCI ILETDIAQAV ASTESYDFLV DVLHKHRVKH NSSPYPIITT  120
KRCRLVDQPS TSHLPHQQQL SQFAPTYTPS IPKNPSLMPQ ISQYRPFSFP SFISTTPIVN  180
GPILSIHNIA RSLGLQENNT NAVTDNNVQD NIVDCSSPTI LANVMNPTLL SPTGSPLDIP  240
DSQSSMRMMG MINSIVAGGS STSNIVVANE ESLALPGHFK SPFLLQSPCP TFLPGNNNDM  300
DVVIPERIDI NDTMHVVSDV VDATVTVLND QQERHDKETN VEYHEQNGIY ERVDAEMVNA  360
NTADGDKCNI SWDELGMAED SLLDMFLDEL QERRDDVLDA RIVLNENPCL DETMFSNPNT  420
SNVNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-1611103193NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G10620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635723.10.0uncharacterized protein LOC4326495 isoform X2
RefseqXP_015635732.10.0uncharacterized protein LOC4326495 isoform X3
TrEMBLA0A0D9WPM10.0A0A0D9WPM1_9ORYZ; Uncharacterized protein
STRINGLPERR06G10620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-22nuclear factor Y, subunit C1