PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G10210.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 408aa    MW: 44066.1 Da    PI: 4.758
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G10210.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.2e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++  ++C+++   lC +C  + H+       Ht++
  LPERR06G10210.2  4 LCNFCGEQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888889876 PP
2zf-B_box22.81.8e-074789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C   +  lC++C  ++H+       H++++
  LPERR06G10210.2 47 LCDKCVSQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                     7*****************************6688899999876 PP
3CCT64.92.4e-22351394144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LPERR06G10210.2 351 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 394
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.869147IPR000315B-box-type zinc finger
SMARTSM003364.1E-10147IPR000315B-box-type zinc finger
CDDcd000211.89E-6447No hitNo description
PROSITE profilePS501198.6464390IPR000315B-box-type zinc finger
CDDcd000216.74E-64790No hitNo description
SMARTSM003360.434890IPR000315B-box-type zinc finger
PfamPF062033.8E-17351393IPR010402CCT domain
PROSITE profilePS5101715.388351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGALCNFCGE QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDK CVSQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWSFVS DIPSVAPEPN  120
CEQGISMMSI CDSGVSNQDN AAGDSSLLDI ASATLMSDLD TAGKLKSLIG SSSEVGVNLL  180
PLATDQMVGS VDSTTAKVPY TADEDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEMPAG NSDEPKLMQP LTSNAVSADS GMSIPGDKGD SSLCIPVRQA  300
RSSISLSFSG LTGESSAGDF QDCGVSTSVL LMGEPPWHPP GSEGSFAGAT RDDAITRYKE  360
KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KKKRR
2360365KKKRRK
3361365KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G10210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721920.0AK072192.1 Oryza sativa Japonica Group cDNA clone:J013152B04, full insert sequence.
GenBankHQ8588020.0HQ858802.1 Oryza sativa Indica Group isolate UT1180 C2C2-CO-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644313.10.0zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D9WPH90.0A0A0D9WPH9_9ORYZ; Uncharacterized protein
STRINGLPERR06G10210.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-103CONSTANS-like 9