PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR06G09630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 26896 Da PI: 6.749 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.8 | 2.4e-38 | 29 | 86 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprC+s+ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ LPERR06G09630.1 29 AEEVRCPRCESANTKFCYYNNYNLSQPRHFCKSCRRYWTKGGLLRNVPVGGGCRKPKR 86 57899**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 30 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 31 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.938 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MQEFHSVPAG LAGRLFGGGV TAKDAAAQAE EVRCPRCESA NTKFCYYNNY NLSQPRHFCK 60 SCRRYWTKGG LLRNVPVGGG CRKPKRPAPS SSAADADAHR DAKNARSSPA AAAPASNASS 120 AGAATGQPSG GVAFAVGDGD ALSLPPPPAP MFADQAATFA SLFAPPPQPR MFPAFASFSA 180 PTKSEEEDIV AAAPVTPRVN TDISPPFAAA RSPAEAAEWA APPPPTVVLD AGMFDLAGGD 240 ASYWNTASWT DPDGTIYQLP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR06G09630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004791 | 6e-84 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014962 | 6e-84 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159027.1 | 3e-76 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A0D9WPA5 | 0.0 | A0A0D9WPA5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G09630.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-30 | DOF zinc finger protein 1 |