PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G09390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 427aa    MW: 46371.5 Da    PI: 6.5133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G09390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09259307355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LPERR06G09390.1 259 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 307
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-10254311No hitNo description
SuperFamilySSF474594.32E-17254324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-17257321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6259307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDDKDNTDLE KSEASEHSQT QTLSFHGGAM FLPEAQIASS ANALTSMANP FPIPPGLWNP  60
PAQSINLGET SFSSLLGMLS AGAPPFAATS GFIDSGTGFP CYNGGNLGAM INHSFPSTQP  120
LGDFHNGVEP CREIEAIASE GCKDVSLTGE KQQEDSVMRH AVDSSGKELS KPERNDEGPR  180
VSSSKKRKRS GQDGGVKHVE GGEQSATVGS VQKNENEKSE TKRSSVASGK SSGKETKDNA  240
GSPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT GKAVMLDEII  300
NYVQSLQRQV EFLSMKLATV NPTLDFNIER IVSKDIFQSQ STTTSSTFGF LPDTVHSRLH  360
PPKYTQVGMP SILNSIDAFG RVTHTQVGTN CAFKEPKHQM SNNLSGEFQD VIEMPFTHGY  420
HRSDDQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178187PRVSSSKKRK
2184189KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G09390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0D9WP780.0A0A0D9WP78_9ORYZ; Uncharacterized protein
STRINGLPERR06G09390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.25e-63bHLH family protein