PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G09130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 479aa MW: 53466 Da PI: 5.9582 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.4 | 1.4e-32 | 123 | 262 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 lp+G++F+Ptd el+++ L+k kv++k++++ + i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg rk+r+++ + + LPERR06G09130.1 123 LPRGVKFDPTDPELLWHLLAKhgKVNAKPHPFIDEfIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtsdlaDVR 215 799**************9988335777775553322544422345**********.677888899******************75444555889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+v++ +g++ g+kk++v+y + k+ekt+Wvmh+y+l LPERR06G09130.1 216 WHKTGKTKPVIV-DGKHLGCKKIMVLYmsPVKGGKPEKTNWVMHQYHL 262 ************.999***********5523666667*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-37 | 108 | 281 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.093 | 123 | 281 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-14 | 124 | 262 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MSRLLALAES RSRVNSGSKK KKSDQPLLHF HPLQVGAAAL VAIAVAGTLV GRELSVRRRG 60 RGDAAMTGTS WIVDSQRIAS KIKNASGLVD ASKHNWVSNP TKACPRCNHV IDNSDVVHQW 120 PGLPRGVKFD PTDPELLWHL LAKHGKVNAK PHPFIDEFIP TVEEDDGICY THPQKLPGVK 180 QDGSVSHFFH RTFKAYNTGI RKRRKINTSD LADVRWHKTG KTKPVIVDGK HLGCKKIMVL 240 YMSPVKGGKP EKTNWVMHQY HLGTGEDEIE GQYVVSKLFF QQQFKPGEKN AQELTSDVSE 300 SIVAEDRLDF PPLPLEEHVC TNQEVLEKSE PSSDQGKETS EINNKDTVVE DDVHMSTEKP 360 EDGDNPSSQD PKWWEGESQF LLDSQQLAEN LAICDEFLQS QSQTSCGGED EPDKIKPRLA 420 VYAQLPVEDL KKDLEECQKL DPSDSANLEL ENTCEFRLSQ IEFSQDSFTT GWAGGKAID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G09130.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060434 | 0.0 | AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640881.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-139 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0D9WP45 | 0.0 | A0A0D9WP45_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G09130.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-141 | NAC family protein |