PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G08990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 441aa    MW: 47694.3 Da    PI: 4.8287
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G08990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.5e-081758338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  LPERR06G08990.1 17 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 58
                     578*****************************6567777776 PP
2CCT67.83e-23385428144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  LPERR06G08990.1 385 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 428
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.481562IPR000315B-box-type zinc finger
PfamPF006431.3E-61859IPR000315B-box-type zinc finger
CDDcd000211.01E-82062No hitNo description
PfamPF062037.5E-18385427IPR010402CCT domain
PROSITE profilePS5101716.083385427IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSSAAKSAAG AVGAKAARAC DGCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERL  60
RLRPSSPLIP SSAAAEATGG RRDEVVPAAW FKRKARTPRG GAKGVVGQML SRRLVVPETM  120
EERRVDEGEV VEEQQQLLYR VPIFDPALAP EFCSPPPPLE DASAAATATA ESCCNEVVDG  180
AVENPTKNPP PMQFFPDGNA NFGPTDAELR EFAADMEALL GRGLDDGNDE DSFCMETLGL  240
IEPVELDDGG GRVKMEDDGD AAAGMPLTMA WCHDFDPTDT SSGEMLDIDF DCDDDSPHAT  300
TPDDSEKVGS SLALSLNYES IIESWGSSPW TDGGERPHVK LNDSWPHDYT PLQGVWMGGV  360
FGHGGDQEQA VVTAARLAAG MDGGREARVS RYREKRRTRL FSKKIRYEVR KLNAEKRPRM  420
KGRFVKRATS AAATVATACV A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395411RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G08990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412496e-76AK241249.1 Oryza sativa Japonica Group cDNA, clone: J065129J23, full insert sequence.
GenBankAK2878366e-76AK287836.1 Oryza sativa Japonica Group cDNA, clone: J065191O19, full insert sequence.
GenBankAP0049936e-76AP004993.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01.
GenBankAP0149626e-76AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641417.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D9WP260.0A0A0D9WP26_9ORYZ; Uncharacterized protein
STRINGLPERR06G08990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-61B-box type zinc finger protein with CCT domain