PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G08490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1048aa MW: 112390 Da PI: 8.1956 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.7 | 4.5e-07 | 318 | 335 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq +CH+GpC++C LPERR06G08490.1 318 CGNHACQDICHPGPCGEC 335 ****************** PP | |||||||
2 | zf-NF-X1 | 22.8 | 2e-07 | 376 | 393 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC LPERR06G08490.1 376 CGVHRCKVTCHEGDCPPC 393 ****************** PP | |||||||
3 | zf-NF-X1 | 16.5 | 1.9e-05 | 471 | 489 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC LPERR06G08490.1 471 CGQHGCQLLCHSGHCPPCL 489 ******************6 PP | |||||||
4 | zf-NF-X1 | 18.4 | 4.7e-06 | 581 | 597 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C ++CH+ pC+p LPERR06G08490.1 581 CGIHACTRTCHPSPCDP 597 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 5.65E-6 | 129 | 198 | No hit | No description |
PROSITE profile | PS50016 | 9.009 | 136 | 195 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 139 | 192 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.391 | 139 | 193 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 2.52E-4 | 226 | 289 | No hit | No description |
SMART | SM00438 | 0.023 | 251 | 269 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.8 | 253 | 268 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.69E-8 | 310 | 350 | No hit | No description |
SMART | SM00438 | 2.3E-4 | 318 | 337 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.2E-4 | 318 | 335 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.15E-13 | 366 | 414 | No hit | No description |
SMART | SM00438 | 0.001 | 376 | 395 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.2E-6 | 376 | 393 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.29E-8 | 461 | 513 | No hit | No description |
SMART | SM00438 | 7.2E-4 | 471 | 490 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0016 | 471 | 488 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.49 | 528 | 546 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 130 | 528 | 544 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.007 | 581 | 616 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0016 | 581 | 597 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 10 | 618 | 644 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.16 | 625 | 646 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1048 aa Download sequence Send to blast |
MQSSSDRRRG GGGNGGGGGP VAVPSSRTVW RPPATAPILP FPNPASEDRP PQRRPRHRNR 60 GNSGGQRRAP PPQERPSPAP PPPRQQQERP SAAAPSPAPT RSARGRVAAA VAGAGMSDGS 120 VPQLVQEIQD KLARGAVECM ICYDMVRRSA PVWSCGSCFS IFHLPCIRKW ARSPASAAEA 180 SDPDSSWRCP GCQSVHAVPA RELSYTCFCG RRREPPNDLF LTPHSCGEPC SKPLERADTA 240 TKGEDAGATR CPHVCVLQCH PGPCPPCKAF APDRLCPCGK QTIVRRCADR TTPVTVIGCS 300 LAGGTVVRSE ACGHLLSCGN HACQDICHPG PCGECELMPG KVTTCHCGKT GLLEKRASCL 360 DPIPTCDKVC DKKLPCGVHR CKVTCHEGDC PPCVVRVEQR CRCGSSGQMV ECYKVLEEEF 420 RCNKPCGRKK NCGRHRCSEC CCPLSKPLAQ LEGGNWDPHL CQIPCGKKLR CGQHGCQLLC 480 HSGHCPPCLE TIFNDLTCAC GRTSIPPPLP CGTPTPSCTH QCMVPQPCGH PASHQCHFGD 540 CPPCVVPVMR ECIGGHVMLR NIPCGSKDIR CNQPCGKNRQ CGIHACTRTC HPSPCDPPTA 600 NGDASSGTGG RASCGQVCGA PRRECKHTCT APCHPSSPCP DSRCEFPMTI TCSCGRITAT 660 VPCGAGGTSS GDNMFEVSII QKLPMPLQPV ESDGRRVPLG QRKLCCDEDC AKLERKKALA 720 EAFDITPPNL DALHFGENSN ASDLLSDLFR REPKWVMAIE ERCKFLVLGK TRGNSSGSLK 780 VHVFCYMMKD KRDAIRLIAD RWKLAVQGIG WDPKRFITIH VTPKSKPPAR ILGSKPGISV 840 TANHHPFFDP MVDMDPRLVV AMMDLPRDAD VSALVLRFGG ECELVWLNDK NAVAVFHDPA 900 RAATALRRLD YGSAYQGAAV FLPSSSAPPG NVWVAGQKDG VAATKNSANS WKKAAACELE 960 PSSGNWTGVV GQAPPSVWRR GGDTVAQVMG TTNRWNALES DTTTSSRPVE ESKPAPRTHA 1020 GSSSSAGPPP VSKMQPEVEV DDWEEACE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G08490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643844.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0D9WNW8 | 0.0 | A0A0D9WNW8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G08490.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |