PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G08240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 424aa MW: 46623.4 Da PI: 8.7102 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 71.9 | 7e-23 | 67 | 132 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ + + +++ l+++ak+L v +rRRiYDi+NVLe+++++ +++kn+++w+g LPERR06G08240.1 67 RKQKSLGLLCTNFVALYDRGDVEAIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 132 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 79.9 | 2.3e-25 | 213 | 293 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e ++++k+RR+YDi+NVL++l+liek ++k+++rw g LPERR06G08240.1 213 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaenNMRTKVRRLYDIANVLSSLKLIEKtqqadSRKPAFRWLG 293 79****************************************************************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-25 | 63 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.64E-16 | 66 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.7E-28 | 67 | 132 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-20 | 68 | 132 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.0E-24 | 210 | 295 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.3E-33 | 213 | 293 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.8E-21 | 214 | 293 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.94E-13 | 215 | 294 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MAATAIPSSS AAPAADAPVH AEVAQLPAPP PRPAPYQPPR LAVDGAGGGA VAVVGGGKPC 60 RHHAYSRKQK SLGLLCTNFV ALYDRGDVEA IGLDDAAKRL GVERRRIYDI VNVLESVGIL 120 VRRAKNRYTW IGFGGVPAAL RELKERALRE VPVVGSPSLD ETSAANVSDD EDDDKFDDAD 180 GDAESEKLSL SQSIDNSSDK PDAAPCKLRS DHRKEKSLGL LTQNFVKLFL TMEIETISLD 240 EAAKRLLGEG HAENNMRTKV RRLYDIANVL SSLKLIEKTQ QADSRKPAFR WLGQPKKNEG 300 DSVTVAFAPT KMTLPSKRAF GTDLTNFDNK RGKLDSTMEN RGNLTLGNRS DFVYGPFHPA 360 GTRARKEHDN RKILEKDRKS IQDWENLASS FRPQYQNPAL NDLFGHYVEA WSSWYSDLKR 420 DAAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 4e-38 | 66 | 285 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G08240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120032 | 0.0 | AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643420.1 | 0.0 | E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 1e-100 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0D9WNU1 | 0.0 | A0A0D9WNU1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G08240.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-102 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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