PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G07490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 409aa    MW: 41159.2 Da    PI: 9.8125
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G07490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.92.5e-40612452134
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +      
  LPERR06G07490.1  61 PAKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSFPshlrla 154
                      789******************************************************************9998777777777755555677788 PP

              TCP  89 ..........................................kaaksaakskksqksaasalnlakesr......akarar...arertrekmr 131
                                                                +  +s+ +   s +s +  l+++ + +      a        +r+r  e + 
  LPERR06G07490.1 155 glaggghrfgvggggarsaadawdrvvglgfgggeqapssatS--SSSSPLLLSFHSGSVGLDVSPSPSpaastsA----AadlSRKRRWEHQE 242
                      8888888888888888888899999999999888888876431..2222444455555544555553333333221....12233333333333 PP

              TCP 132 ikn 134
                      +++
  LPERR06G07490.1 243 MQQ 245
                      333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-4265248IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67567121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDVTGDAGGG RRPNFPLQLL GKKEEQPCST SQLSAGGANG SAAPGELQQA RATTKAAAPA  60
PAKRTSTKDR HTKVDGRGRR IRMPAICAAR VFQLTRELGH KTDGETIEWL LQQAEPAVIA  120
ATGTGTIPAN FTSLNISLRS SGSSLSFPSH LRLAGLAGGG HRFGVGGGGA RSAADAWDRV  180
VGLGFGGGEQ APSSATSSSS SPLLLSFHSG SVGLDVSPSP SPAASTSAAA DLSRKRRWEH  240
QEMQQQQQYQ QQMAGYTQSQ IPAGTVWMVP SSQAGGGAPI PGGGAGAGES VWTFPQSGSG  300
GGGGGATAVY RGVPSGLHFM NFPAAPMALL PGGHQLGLGG GGGDGQSGNI LAALNAYRAQ  360
AAQADGAGAP GQNNGAQGSN RHHQHQQHGG GGAGDGDDRR HESMNASDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G07490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655935.11e-145PREDICTED: transcription factor TCP14-like
SwissprotQ93Z001e-49TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0D9WNJ30.0A0A0D9WNJ3_9ORYZ; Uncharacterized protein
STRINGLPERR06G07490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-40TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]