PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G07150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34528.4 Da PI: 8.4995 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +++++G g+W+ ++ g++R++k+c++rw +yl LPERR06G07150.1 14 KGPWTPEEDEKLMSYIQKHGHGSWRVLPELAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W+tIa++++ gRt++++k++w+++l LPERR06G07150.1 67 RGNFSREEEQTILHLHSILGNK-WSTIAKHLP-GRTDNEIKNFWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.022 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.618 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGRPPCCDEN GLKKGPWTPE EDEKLMSYIQ KHGHGSWRVL PELAGLNRCG KSCRLRWTNY 60 LKPDIKRGNF SREEEQTILH LHSILGNKWS TIAKHLPGRT DNEIKNFWNS HLRKRLIKLG 120 IDPMTHRPRT DFFQSLPQLI ALANLRHIIE QRPWDGHIEG LQTVAVQAAK LKYMKSLLHS 180 AVSTEASPTN SSSNLNTITT ELEQKKLLSP PIPQVPSSSV PESAGKVSHN QMPSTLPDQQ 240 IGRTNLFSNN IMNGDEWCST EAENGSQKSM LVPENLLPPL TDMPVPNFCN TISIPNCDSS 300 NSIPPLPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G07150.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655921.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | Q9S9Z2 | 5e-97 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0D9WNE2 | 0.0 | A0A0D9WNE2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G07150.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-98 | myb domain protein 93 |
Publications ? help Back to Top | |||
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