PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G06340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 275aa    MW: 29971.1 Da    PI: 10.8802
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G06340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.89.7e-1681169397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +q+lw+  De++lL G + f+ k+g  p   d+ a+y+ +++sis+++ k+ +  K++r K +f++   +         +++h+ ++  l++ +
  LPERR06G06340.1  81 VQKLWTGADEVALLAGAVAFRRKHGYAPRLpDMGALYKSIRRSISSHIDKDKVYYKLKRVKSRFQHATPR-------PNANPHEIQVRVLCEEL 167
                      79************************98877**********************************99988.......44566666777777776 PP

           DUF573  96 Wg 97 
                      Wg
  LPERR06G06340.1 168 WG 169
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-1582169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEGADAAVAP LHPSSPRSKK RSSASASASA SSSRRRPTTS RRRPTANPSL GVVYASASRH  60
SERKRKPVAL AAHGSGSGGA VQKLWTGADE VALLAGAVAF RRKHGYAPRL PDMGALYKSI  120
RRSISSHIDK DKVYYKLKRV KSRFQHATPR PNANPHEIQV RVLCEELWGG ELAAPVADRE  180
AGEGRDAYVG RDLDFAARLP VVSDVLGEYW RKNGRVLSGL SLKKGLARVG PEEGREVETK  240
WRQQLEAETQ IQGQRHELAK EVCAMLMDAV RGLGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G06340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641305.18e-83formin-like protein 5
TrEMBLA0A0D9WN510.0A0A0D9WN51_9ORYZ; Uncharacterized protein
STRINGLPERR06G06340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.12e-07DNA-binding storekeeper protein-related transcriptional regulator