PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G06090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 294aa    MW: 32236.7 Da    PI: 8.0501
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G06090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.46e-2494138145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr++ + +k+CE+H+hrg++rsrk++e+
  LPERR06G06090.1  94 DPEPGRCRRTDGKKWRCSREAHGESKYCEKHMHRGKNRSRKPVET 138
                      79****************************************986 PP
2QLQ621.6e-211750336
              QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     FTa+Q+q+L++Q+l+yKy++a++PvPp+Ll++++
  LPERR06G06090.1 17 FTATQWQELEHQALIYKYMVAGAPVPPDLLLHLR 50
                     ******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-91551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.7881651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-161749IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.2294138IPR014977WRC domain
PfamPF088792.3E-1995137IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMMMGGGGGG GGGRWLFTAT QWQELEHQAL IYKYMVAGAP VPPDLLLHLR HHHRHDDVDT  60
APSLAFPSHH HHQPSLGWGC YGGAAAAYGR RVEDPEPGRC RRTDGKKWRC SREAHGESKY  120
CEKHMHRGKN RSRKPVETAL ADVYRPSALS ISPPPTDAPL QLHLDSFHAT PTTTTASPPP  180
SYHRYAHGTP LFPAAGYGGG GNWSSSSSKE HCLTLGGGAA DHLSLDRSAD HHQHDAMSAV  240
ATERPLRRFF DDWPRNDGGG ERRPPWDGTQ LSISIPTTTT ASRYNNGDHL QTSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G06090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641768.11e-129growth-regulating factor 2
SwissprotQ6AWY71e-130GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A0D9WN200.0A0A0D9WN20_9ORYZ; Uncharacterized protein
STRINGLPERR06G06090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-29growth-regulating factor 5