PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 1437aa MW: 157167 Da PI: 6.8146 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 8.1e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ LPERR06G05720.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RD 216 99*****************************96555444..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ LPERR06G05720.1 217 EKSQLLLGIRRA 228 677789999997 PP | |||||||
2 | Auxin_resp | 122.4 | 3.4e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ LPERR06G05720.1 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-44 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-40 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.55E-20 | 126 | 227 | No hit | No description |
SMART | SM01019 | 5.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-5 | 939 | 1031 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.473 | 945 | 1029 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.59E-7 | 963 | 1024 | No hit | No description |
SuperFamily | SSF50129 | 5.18E-26 | 1244 | 1337 | IPR011032 | GroES-like |
Hamap | MF_00580 | 22.072 | 1245 | 1337 | IPR020818 | GroES chaperonin family |
Gene3D | G3DSA:2.30.33.40 | 2.8E-29 | 1245 | 1337 | IPR020818 | GroES chaperonin family |
SMART | SM00883 | 3.2E-37 | 1245 | 1336 | IPR020818 | GroES chaperonin family |
CDD | cd00320 | 1.69E-36 | 1245 | 1336 | IPR020818 | GroES chaperonin family |
Pfam | PF00166 | 8.7E-27 | 1246 | 1335 | IPR020818 | GroES chaperonin family |
PROSITE pattern | PS00681 | 0 | 1246 | 1270 | IPR018369 | Chaperonin GroES, conserved site |
Gene3D | G3DSA:2.30.33.40 | 2.7E-34 | 1343 | 1436 | IPR020818 | GroES chaperonin family |
SMART | SM00883 | 3.7E-41 | 1343 | 1436 | IPR020818 | GroES chaperonin family |
SuperFamily | SSF50129 | 1.65E-26 | 1343 | 1436 | IPR011032 | GroES-like |
Hamap | MF_00580 | 21.723 | 1343 | 1437 | IPR020818 | GroES chaperonin family |
PROSITE pattern | PS00681 | 0 | 1344 | 1368 | IPR018369 | Chaperonin GroES, conserved site |
Pfam | PF00166 | 2.5E-27 | 1344 | 1435 | IPR020818 | GroES chaperonin family |
PRINTS | PR00297 | 4.6E-22 | 1344 | 1359 | IPR020818 | GroES chaperonin family |
CDD | cd00320 | 1.17E-36 | 1345 | 1436 | IPR020818 | GroES chaperonin family |
PRINTS | PR00297 | 4.6E-22 | 1366 | 1387 | IPR020818 | GroES chaperonin family |
PRINTS | PR00297 | 4.6E-22 | 1401 | 1413 | IPR020818 | GroES chaperonin family |
PRINTS | PR00297 | 4.6E-22 | 1423 | 1436 | IPR020818 | GroES chaperonin family |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006457 | Biological Process | protein folding | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1437 aa Download sequence Send to blast |
MKDQGSSGVS PGPAEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK 60 ELDNIPGYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYERDAM LASELGLKQN 120 KQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQSA LFPGLSLVQW 420 MAMQQNPQML TAASPTVQSP YLTSNTLAMQ DVMGSSNEDP TKRLNAQAQN IVLPNLQVGS 480 KVDHPVMTQH QQQQHQLAQQ QQHQLAQQQQ QVQPSQQSSV VLQQHQAQLM QQNAIHLQQQ 540 QEHLQRQQSQ PTQQLKTAAS LHSVEQHKLK EQTSGGQVAS QAQLLNQIFP PSSSQLQQLG 600 LPKSPTQRQG LTGLPISGSL QQPTLTQTSQ AQQAAEYQQA LLQSQQHQLQ QLSQPEVQLQ 660 LLQKIQQQNM LSQLNPQHQS QLIQQLSQKS QEILQQQILQ HQFGGSDAVG QLKQSPSQQT 720 PLNHIAGSLT PQQLVRSHSA LAESGEPSSS TAPSASRISP MNSLGRAHQG SRNFSDMVAT 780 PHIDSLLQEI QSKPDNRIKN DIHSKETVAI PNRHPVSDQL DASSATSFCL DESPREGFSF 840 PPVCLDNNVQ VDPRDSFLIA ENVDAMMPDA LLSRGMASGK GMCNLTSGQR DHRDVENELS 900 SAAFSSQSFG VPDMSFKPGC SSDVAVADAG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI 960 DITRYRDYDE LRHDLACMFG IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVGCVK 1020 SIKILSAAEV QQMSLDGDLG GVPSQTQACS ASDDANAWRV SKAAYLDRSD QVVRPDSTTF 1080 QNHLVRPNPV AAAPTGNLSL WNTVPHPNPL TTPRIPNPAD SKPEQDKPGG FEINHCSAFA 1140 VGFIPLLLLV FLPSSHAKAQ PDSSAEPTRF EANREVSQLF SQQLRMSSVQ LSGAGVAAVA 1200 FTKKGASSFD GLRLAPPSAR VCSSRRPSRS LVVKAATVVT PKYTSLKPLG DRVLVKLGAA 1260 EEKTVGGILL PTTAQSKPQG GEVVAVGEGK TIGDKKVEVS VPIGAEVVYS KYAGTEVEFN 1320 DSKHLLLKED DIIGILESDD AKDMKPLSDR VLIKVAEAED KTAGGLILTE TTKEKPSIGT 1380 VVAVGPGPLD DEGKRQPLSV SAGSTVLYSK YAGSEFKGAD GTNYIVLRVS DVMAVLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 17 | 356 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05720.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103327 | 0.0 | AK103327.1 Oryza sativa Japonica Group cDNA clone:J033125L14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656735.1 | 0.0 | PREDICTED: auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | A0A0D9WMX3 | 0.0 | A0A0D9WMX3_9ORYZ; Auxin response factor | ||||
STRING | LPERR06G05720.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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