PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26555 Da PI: 9.7856 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.6e-16 | 132 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp +f +++ + +++ t+ l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r++f +v LPERR06G05590.1 132 FIKPMLQSHVTGGFWLGLPTQFSRKYL-P-KRDETICLVDEEDDEFDTLY--LAHKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTRF--KV 217 89************************5.3.35669***************..677766..9************************99999..99 PP EEE-S CS B3 95 kvfrk 99 ++r+ LPERR06G05590.1 218 YIIRA 222 99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-24 | 125 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-20 | 125 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-25 | 130 | 221 | No hit | No description |
Pfam | PF02362 | 2.4E-14 | 132 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-19 | 132 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 132 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MADAASYEEQ RRRQVEENKR KLDELRLHQL SAAVRESGPR PSPVKPRKRK ERAAAGAGED 60 VPLRRSGRVA SLPEKPKYQD EFHDFERKIR RSYGGKRRNL SGRVYATEKE REHAIATAED 120 LEKELGSDHP IFIKPMLQSH VTGGFWLGLP TQFSRKYLPK RDETICLVDE EDDEFDTLYL 180 AHKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTRFKVYII RASSLYESDN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656731.1 | 1e-141 | PREDICTED: B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-142 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A0D9WMV9 | 1e-168 | A0A0D9WMV9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05590.1 | 1e-169 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-58 | B3 family protein |
Publications ? help Back to Top | |||
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