PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G05580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 39094.3 Da PI: 4.4624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f ++eeAa+a++a +++++g LPERR06G05580.2 109 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 158 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-35 | 109 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 109 | 167 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.66E-31 | 109 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-31 | 109 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MCGGAILSDL LPPTATRRVT AGDLWLGKKS KKNKKSSSGG RLRRREEEDF EADFEEFEGE 60 SEVEYSDADE AKPFAVLPSS GFTRGGLNTT ITGADGPAAR SAKRKRKNQF RGIRQRPWGK 120 WAAEIRDPRK GVRVWLGTFN SPEEAARAYD AEARRIRGKK AKVNFPDGAP VASQRSHAQL 180 SSVNMPTFSV EEKPAIMSAG NNNMYNTNAY AYPAVEYTLQ EPFMQTENVT FVPAMDAIVD 240 PFVNLSSDQG SNSLGCSDFS QENDTKTPDI TSMFAPTLTE VDESAFLQNN SSDAMVPPVM 300 GNASVDLSDL EPYMKFLIDG GSDESIDTLL SSDGSQDVAS SMDLWSFDDM PVSAEFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 109 | 166 | 5 | 63 | ATERF1 |
3gcc_A | 1e-18 | 109 | 166 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G05580.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF190770 | 0.0 | AF190770.1 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds. | |||
GenBank | AK060742 | 0.0 | AK060742.1 Oryza sativa Japonica Group cDNA clone:001-032-E01, full insert sequence. | |||
GenBank | AK069833 | 0.0 | AK069833.1 Oryza sativa Japonica Group cDNA clone:J023031B06, full insert sequence. | |||
GenBank | DQ849289 | 0.0 | DQ849289.1 Oryza sativa (indica cultivar-group) ethylene-responsive factor 15 (ERF-15) mRNA, complete cds. | |||
GenBank | EU837257 | 0.0 | EU837257.1 Oryza sativa Japonica Group clone KCS063A06 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643752.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-121 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0D9WMV7 | 0.0 | A0A0D9WMV7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G05580.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-36 | related to AP2 2 |