PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 357aa    MW: 39094.3 Da    PI: 4.4624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19109158255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  LPERR06G05580.1 109 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 158
                      69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-35109172IPR001471AP2/ERF domain
PROSITE profilePS5103223.314109166IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-21109167IPR016177DNA-binding domain
CDDcd000182.66E-31109167No hitNo description
Gene3DG3DSA:3.30.730.106.9E-31109167IPR001471AP2/ERF domain
PRINTSPR003673.6E-10110121IPR001471AP2/ERF domain
PfamPF008472.0E-11110158IPR001471AP2/ERF domain
PRINTSPR003673.6E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCGGAILSDL LPPTATRRVT AGDLWLGKKS KKNKKSSSGG RLRRREEEDF EADFEEFEGE  60
SEVEYSDADE AKPFAVLPSS GFTRGGLNTT ITGADGPAAR SAKRKRKNQF RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN SPEEAARAYD AEARRIRGKK AKVNFPDGAP VASQRSHAQL  180
SSVNMPTFSV EEKPAIMSAG NNNMYNTNAY AYPAVEYTLQ EPFMQTENVT FVPAMDAIVD  240
PFVNLSSDQG SNSLGCSDFS QENDTKTPDI TSMFAPTLTE VDESAFLQNN SSDAMVPPVM  300
GNASVDLSDL EPYMKFLIDG GSDESIDTLL SSDGSQDVAS SMDLWSFDDM PVSAEFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18109166563ATERF1
3gcc_A1e-18109166563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1907700.0AF190770.1 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds.
GenBankAK0607420.0AK060742.1 Oryza sativa Japonica Group cDNA clone:001-032-E01, full insert sequence.
GenBankAK0698330.0AK069833.1 Oryza sativa Japonica Group cDNA clone:J023031B06, full insert sequence.
GenBankDQ8492890.0DQ849289.1 Oryza sativa (indica cultivar-group) ethylene-responsive factor 15 (ERF-15) mRNA, complete cds.
GenBankEU8372570.0EU837257.1 Oryza sativa Japonica Group clone KCS063A06 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-121ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0D9WMV70.0A0A0D9WMV7_9ORYZ; Uncharacterized protein
STRINGLPERR06G05580.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-36related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]