PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 492aa    MW: 54294.3 Da    PI: 5.2506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11196240347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WTt+E+  ++++ + +G g+Wk I+r +   +t+ q+ s+ qk+
  LPERR06G04400.1 196 FWTTDEHRMFLRGLQHYGRGDWKNISRFFVPSKTPVQVSSHAQKF 240
                      5*****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.371190245IPR017930Myb domain
SMARTSM007177.0E-10193243IPR001005SANT/Myb domain
SuperFamilySSF466892.08E-15194246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-14196243IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-9196236IPR009057Homeodomain-like
PfamPF002491.9E-7197239IPR001005SANT/Myb domain
CDDcd001676.04E-9197241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAYVLPIVFR SSIRSCCALL AIAMDPMFTS GMEWTDVDKE EVRSIIARLS NNFNVVGASN  60
GNNNTRHDRI VSELEAWSPW MTRNQIIDLY VDIVVDMSTQ APTQSHDAGS SVHPTFEPIK  120
DNFGMLPGED AAMNNIDFGM NKNKYYDGSG MVFGDAPIGE TVEQAPPMPV VVNSGNEVNW  180
GSGRQRAEPT SGKSKFWTTD EHRMFLRGLQ HYGRGDWKNI SRFFVPSKTP VQVSSHAQKF  240
FRRLERADTK QRYSINDVGL NDVENPLDNN YSGWQASTFA GGNGTTGCAA PPANTSSVAA  300
MNNDVGRYGI PDPSDNNYGG WQVLAFASGH LNPVSGDGAS GHNIASPATS SVGQFWAPLL  360
YNPKKKKQQQ QQQFSQMQMP QLQQAWNHQT QQQFTQMQVP RPQDDGCSCN SINGGRRFVD  420
AAPMEGGAMW NDQQMMGAAA APMEEAFENF APFGGATDNF ASTSGSGYYQ QEHAEPWMMN  480
NNMFCKANYL QI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.12e-84PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0D9WMF80.0A0A0D9WMF8_9ORYZ; Uncharacterized protein
STRINGLPERR06G04400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-20MYB family protein