PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 355aa    MW: 39533.5 Da    PI: 6.6807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-15179225147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eE+ l++++ +++G g+Wk I+r++ ++Rt+ qc s+ qky
  LPERR06G04380.1 179 RVVWTKEEHRLFLQGMREFGRGDWKNISRHFVTTRTPAQCSSHAQKY 225
                      678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.226174230IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-12174227IPR009057Homeodomain-like
SuperFamilySSF466891.36E-17175229IPR009057Homeodomain-like
SMARTSM007178.2E-13178228IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.1E-15178228IPR006447Myb domain, plants
PfamPF002498.8E-13179225IPR001005SANT/Myb domain
CDDcd001673.50E-11182226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSIVIQGWT TSEIEEARSL ITSPNNGGSS GYGGDGDRNK KHHVYIMSEL QKWFPSKTPD  60
QVLNLYLDLI IGTSMVMSSS NKSDADNIIQ DAGHVTSLAN GNTEMVEEEQ TMLNNEGLLF  120
DYPLEEIEMG NQTEQEAEID VQNEVDVQAR EALVIKEKEV EAPKIQTNHW QAASSTRRRV  180
VWTKEEHRLF LQGMREFGRG DWKNISRHFV TTRTPAQCSS HAQKYFLKLA TKGKAAPPAP  240
KRHRFRYDWA AITGQQQAAA PAPAPAPAHG QWMHHPMSTG GFNNIFDPRL CLPPQVPNPI  300
FVPNHFAMPP LMYHHLPGGQ PVLPFPVPAG AAVHGSGQRA FAPQLPWMND SNSMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.16e-86uncharacterized protein LOC107281238
TrEMBLA0A0D9WMF60.0A0A0D9WMF6_9ORYZ; Uncharacterized protein
STRINGLPERR06G04380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-20MYB family protein