PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G03790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25824.3 Da PI: 7.8187 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+ LPERR06G03790.1 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 90.8 | 2.5e-30 | 87 | 173 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s +q++ kLk ++e Lq++qR+llGedL +Lsl+eL qLe+q+eksl +iRs Kn+ l++q+ el++ke++lq+ nk+L++k++e LPERR06G03790.1 87 ELSNYQDYLKLKTRVEFLQTTQRNLLGEDLVPLSLNELDQLENQIEKSLMNIRSSKNQQLFDQLFELRRKEQQLQDVNKDLKRKIQE 173 456789*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.86E-43 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 7.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.528 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-24 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTT 60 SCMYKTLERY RNCNYNPCEA SAALETELSN YQDYLKLKTR VEFLQTTQRN LLGEDLVPLS 120 LNELDQLENQ IEKSLMNIRS SKNQQLFDQL FELRRKEQQL QDVNKDLKRK IQESSGENMP 180 HISCQDVGPS GHASEANQEF LHTAICDPSL HIGYRAYLDH LNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-20 | 83 | 171 | 13 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-20 | 83 | 171 | 13 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-20 | 83 | 171 | 13 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-20 | 83 | 171 | 13 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G03790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064184 | 0.0 | AK064184.1 Oryza sativa Japonica Group cDNA clone:002-104-B10, full insert sequence. | |||
GenBank | OSU78890 | 0.0 | U78890.1 Oryza sativa MADS box protein (OsMADS5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641896.1 | 1e-150 | MADS-box transcription factor 5 | ||||
Swissprot | A2Y9P0 | 1e-151 | MADS5_ORYSI; MADS-box transcription factor 5 | ||||
Swissprot | Q0DEB8 | 1e-151 | MADS5_ORYSJ; MADS-box transcription factor 5 | ||||
TrEMBL | A0A0D9WM81 | 1e-164 | A0A0D9WM81_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G03790.1 | 1e-164 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 5e-75 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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