PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G03780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 441aa MW: 50266.5 Da PI: 6.3917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 144 | 190 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l LPERR06G03780.1 144 KGQWTMEEDRKLVKLVEQFGLRKWSHIAQMLP-GRVGKQCRERWHNHL 190 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 196 | 238 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed+ l++ +k+ G++ W+ Ia++++ gRt++++k++w+ LPERR06G03780.1 196 KDTWSEDEDKVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 238 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.127 | 139 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-31 | 141 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 143 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 145 | 197 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.6E-19 | 147 | 205 | No hit | No description |
CDD | cd00167 | 4.70E-15 | 147 | 190 | No hit | No description |
PROSITE profile | PS51294 | 20.793 | 195 | 245 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 195 | 243 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 198 | 243 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-12 | 198 | 241 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDFSCFQPHS AGCDDMPFDS YLQQNVHQEL HLVDHPFEGV SHGHEYYSPS AGESIHLPFA 60 TYYDLGHEYY YPQGGDKEAV IVDRSLPIMH KASPHQPLFT PKSEVSHLIG GSVVGSYKAF 120 EMNARLIRRK RASGKSLKKA NVVKGQWTME EDRKLVKLVE QFGLRKWSHI AQMLPGRVGK 180 QCRERWHNHL RPNIKKDTWS EDEDKVLIQT HKEVGNKWAE IAKHLPGRTE NSIKNHWNAT 240 KRRQFARRRS RASSKNPKSG TLLQNYIKSL GIGPIKASVR LAPPEPTVSS SPAPSTQNVN 300 SDKRPDSNPI NQMVTQGMLN MDENNYIQAN SCEELLVSSY DDLCLDMCDH LFETKEVTPY 360 QVYNIDDDVD MNYIFNDIDY ADKIGHEIDM EMAWEDDVLE DNETGSSTLE IPAGLVHINT 420 VHVKEEMDLV EMVTRTQSCG K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-43 | 142 | 245 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-44 | 142 | 245 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-44 | 142 | 245 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G03780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241812 | 0.0 | AK241812.1 Oryza sativa Japonica Group cDNA, clone: J065210K15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641269.1 | 0.0 | transcription factor MYB119 isoform X1 | ||||
TrEMBL | A0A0D9WM80 | 0.0 | A0A0D9WM80_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G03780.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 8e-65 | myb domain protein 98 |