PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G01000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 346aa    MW: 37521.6 Da    PI: 8.3149
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G01000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-2491135145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  LPERR06G01000.1  91 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 135
                      79****************************************986 PP
2QLQ60.26e-211953236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     aFTaaQ+++L++Q+l+yKyL+a++PvP +Ll++i+
  LPERR06G01000.1 19 AFTAAQWAELEQQALIYKYLMAGVPVPGDLLLPIR 53
                     8********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-111854IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.8E-151953IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8971954IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34691135IPR014977WRC domain
PfamPF088793.9E-2192134IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLSSSPSAAA VGMGRGAAAF TAAQWAELEQ QALIYKYLMA GVPVPGDLLL PIRPHSAAAA  60
TYSFANPAAA PFYHHHHPSL SYYAYYGKKL DPEPWRCRRT DGKKWRCSKE AHPDSKYCER  120
HMHRGRNRSR KPVESKTSSP AAPQSEPQLS NVTNANHDNA DAPIQSLTVG ANKTHGLSLG  180
GGVGSSQFHL DASSYGSKYS LGAKTDVGEL SFFSGASGNT RGFTIDSPTD SPWHSLPSSV  240
PPYPMSKPRD SGLLSGAYSY SHLEPSQELG QVTIASLSQE QERRSFGGGA GGLLGNVKQE  300
NQPLRPFFDE WPGRRDSWSE MDDERSNQTS FSTTQLSISI PMPKCD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G01000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1035080.0AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641605.10.0growth-regulating factor 5 isoform X4
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0D9WL480.0A0A0D9WL48_9ORYZ; Uncharacterized protein
STRINGLPERR06G01000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-28growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]