PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G00630.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 314aa MW: 34824.1 Da PI: 10.3835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G00630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	141	194	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ LPERR06G00630.1 141 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 194 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.34E-15	138	195	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	139	194	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	141	195	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	142	193	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MMMELFPRQQ LDLSLHISTP SSSSSPSPSL SPAPTSAIAS WPWTKQQQLP QETTAAKTTT 60 SARSACSPVL PPTTNSSTNH LANLQLKSPL QPIHGFPVYH GQQQQQKQRY EPYAVGGRSN 120 DGGRRLFSGH RQIGRRSLRA PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL 180 TLAHVKSHLQ MYRTIKNTDR PVSYAGHNND GFDNVSSGDI SDDSFAEGPL RQNKSMLASD 240 QNDTTNIYSG LWSNNSSGKV NRLGLSLPIR EPTNEFYRRY LKNAQLNVDL DTSVLKLPGR 300 PNLEFTLGIG KASQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	142	196	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	142	196	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	142	196	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	142	196	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	142	196	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G00630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656560.1	1e-104	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	4e-44	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0D9WKZ5	0.0	A0A0D9WKZ5_9ORYZ; Uncharacterized protein
STRING	LPERR06G00630.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17435	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-46	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]