PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR06G00360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15774.8 Da PI: 7.2739 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 90 | 124 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT E++++++a +++ + Wk+I +++g +t LPERR06G00360.1 90 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 124 789*****************77.*********.8885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.29E-10 | 77 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-9 | 88 | 125 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.7E-4 | 89 | 124 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 90 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-4 | 92 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MVTWTCLLLP PPSLTASLCH RNIFHPPQHQ RRSIERALNP SDLEEGGIVS RREEMSSGTE 60 HHPLDSSAGE PPEDDAGRRV RKPYTITKSR ESWTDPEHDK FLEALQLFDR DWKKIEAYVG 120 SKTVIQPHKL SYHKLLI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR06G00360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK111672 | 2e-70 | AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9WKV4 | 5e-97 | A0A0D9WKV4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G00360.1 | 8e-98 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17335 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.2 | 2e-28 | MYB_related family protein |