PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G00240.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 396aa MW: 45392.5 Da PI: 6.7054

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G00240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.8e-53	15	165	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....................kvkaeekewyfFskrdkkyatgkrk 74 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++++e++ewyfFs++dkky+tg+r+ LPERR06G00240.1 15 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQAsrdqvvylygatercringgAAEEEQNEWYFFSHKDKKYPTGTRT 107 69**************************.99**********956899**99999888765566788************** PP NAM 75 nratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++g+Wkatg+dk+++++ ++ lvg++ktLv+y+grap+g+k+dW+mheyrle LPERR06G00240.1 108 NRATAAGFWKATGRDKPIYASkhmSHLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 165 ***************985444445**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-54	8	200	IPR003441	NAC domain
PROSITE profile	PS51005	56.056	15	200	IPR003441	NAC domain
Pfam	PF02365	8.7E-28	16	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MDGSSMSSSS TQAQVPPGFR FHPTDEELVD YYLRKKVAAR RIDLNVIKDV DLYKIEPWDL 60 QASRDQVVYL YGATERCRIN GGAAEEEQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG 120 RDKPIYASKH MSHLLVGMRK TLVYYRGRAP NGHKSDWIMH EYRLETSETA PPQASNHHIH 180 KLAIPETCEE GWVVCRVFKK RLPTTRRDSE HDAPCSWYVD EDAPPAAFMS PMMSSRSMRG 240 GITLQEQHLQ MLDNNTYYKH RDQLISNKTQ QQLQQVPAGH HHHHHLLNTM PHELESSASF 300 HSLLVSPDHH QINMHHHAQA DQLFDDMHAV DQVTTTDWRV LDKFVASQLS NDDATNKLPA 360 DYADEGDILQ VNDKQEVATA DYASTSTSSS QIDPWK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MDGSSMSSSS TQAQVPPGFR FHPTDEELVD YYLRKKVAAR RIDLNVIKDV DLYKIEPWDL  60
QASRDQVVYL YGATERCRIN GGAAEEEQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG  120
RDKPIYASKH MSHLLVGMRK TLVYYRGRAP NGHKSDWIMH EYRLETSETA PPQASNHHIH  180
KLAIPETCEE GWVVCRVFKK RLPTTRRDSE HDAPCSWYVD EDAPPAAFMS PMMSSRSMRG  240
GITLQEQHLQ MLDNNTYYKH RDQLISNKTQ QQLQQVPAGH HHHHHLLNTM PHELESSASF  300
HSLLVSPDHH QINMHHHAQA DQLFDDMHAV DQVTTTDWRV LDKFVASQLS NDDATNKLPA  360
DYADEGDILQ VNDKQEVATA DYASTSTSSS QIDPWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-45	9	201	9	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G00240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002842	1e-108	AP002842.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19.
GenBank	AP014962	1e-108	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694236.1	0.0	PREDICTED: NAC domain-containing protein 105-like
Swissprot	Q9FWX2	5e-98	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0D9WKT8	0.0	A0A0D9WKT8_9ORYZ; Uncharacterized protein
STRING	LPERR06G00240.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12102	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	5e-85	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]