PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G22680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11982.4 Da PI: 9.7908 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 15 | 59 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +++ +a + + ++ +W ++r+mg +++ +++ ++ LPERR05G22680.1 15 GWTQRQNKQFECALAVYDKEtpeRWQNVSRYMGGAKSPDEVRRHF 59 6*****************99*************899********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 8 | 63 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.2E-5 | 12 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.13E-10 | 14 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MASSKQQQQQ QAAGGWTQRQ NKQFECALAV YDKETPERWQ NVSRYMGGAK SPDEVRRHFD 60 HLLHDVARIE SSAGTRLIPF LRYNHLDLDA TTRPIYRYLK FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-16 | 16 | 83 | 11 | 73 | RADIALIS |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G22680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 2e-69 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT836452 | 2e-69 | CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639028.1 | 9e-34 | protein RADIALIS-like 3 | ||||
TrEMBL | A0A0D9WK58 | 2e-71 | A0A0D9WK58_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G22680.1 | 3e-72 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19510.1 | 4e-21 | RAD-like 5 |