PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 245aa    MW: 25031.7 Da    PI: 8.2779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.2e-20126160135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++
  LPERR05G22620.1 126 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 160
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-19120171IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14123161No hitNo description
PROSITE profilePS5011413.916124156IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-17124160IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.28E-15125157No hitNo description
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
PfamPF003206.5E-18126160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MASSTFSLFF PLPTKNQSWP APAPAMEESS PYDDHSTVTT SPSSSSSSSG SVDCTLSLGT  60
PSSRRAAVPP VANHGGATPA AAAAAHYSSM SVAWNASAES YYCHQGKPAA GAAVAVGHDA  120
LLDRRCANCG TASTPLWRNG PRGPKSLCNA CGIRYKKEER RAAATTDGAV AAGYGFTAQR  180
ARSTPGAKAA TCGEEAAPYA AAAGEVVADA APFLAWRLNV VPPAAATAAA AFSVWPERGS  240
FYHYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734642e-68AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012872e-68AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845462e-68DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654834.11e-86PREDICTED: GATA transcription factor 19
SwissprotB8AX516e-75GAT15_ORYSI; GATA transcription factor 15
SwissprotQ6L5E55e-75GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A0D9WK511e-174A0A0D9WK51_9ORYZ; Uncharacterized protein
STRINGLPERR05G22620.11e-174(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-25GATA transcription factor 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]