PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G21780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GATA | ||||||||
Protein Properties | Length: 230aa MW: 23596.8 Da PI: 8.4161 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.7 | 1e-20 | 103 | 137 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC+tt+TplWR+gp+g+k+LCnaCG++y+k+++ LPERR05G21780.1 103 CANCNTTSTPLWRNGPRGPKSLCNACGIRYKKEER 137 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.285 | 97 | 133 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.6E-19 | 97 | 149 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-14 | 98 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-17 | 101 | 137 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.96E-14 | 102 | 134 | No hit | No description |
Pfam | PF00320 | 2.2E-18 | 103 | 137 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 103 | 128 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAPAPCTCGM MYGGCGGGCA SAFSLLFPMA GGQYYYRHCG AAAEENRPSP YGVGGAAVDC 60 TLSLGTPSTR RAEATPPPTT ARPGGGGGKQ DGAAVASCKP RRCANCNTTS TPLWRNGPRG 120 PKSLCNACGI RYKKEERRAA AAVAPAPPVM DSATAAAYAY CYSMPTPAPA PAQWGCYGQA 180 AAAAKSASYA MFGEVVDAAD DGPCLSWRLN MMPSSPAFAV GERPGLFQYY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G21780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638692.2 | 2e-87 | GATA transcription factor 19 | ||||
TrEMBL | A0A0D9WJV8 | 1e-162 | A0A0D9WJV8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G21780.1 | 1e-162 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 4e-22 | GATA transcription factor 19 |