PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G21400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 34332.6 Da PI: 9.2794 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.8 | 5.2e-33 | 65 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ LPERR05G21400.1 65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsddv 153 799************.99****998885665442...133333665557**********.555666688******************8566665 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+s +g+ +g kk+Lv+y g+++k+ekt+Wvmh+y+l LPERR05G21400.1 154 dgsGGETRWHKTGKTRPVMS-SGRPMGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 208 55433778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-38 | 56 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.568 | 65 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-15 | 66 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTWCSSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ 60 DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG 120 VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DDVDGSGGET RWHKTGKTRP VMSSGRPMGY 180 KKILVLYTNY GKQRKPEKTN WVMHQYHLGS DEEERDGELV VSKVFFQTQP RQCGSAAKEA 240 AATAAIAVAV NGGGGGGYSG HHQAAAGGGN GGFLKEANVN LHEFYDPATT MGGYRAPAPV 300 AHFTPNLAVH AARNNGFVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-11 | 64 | 208 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G21400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100983 | 0.0 | AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639992.1 | 1e-165 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-121 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0D9WJQ2 | 0.0 | A0A0D9WJQ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G21400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-113 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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