PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21380.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 1351aa    MW: 148999 Da    PI: 5
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21380.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-1960114357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      kR   t++qle+Le+ + +++yp++++r++L+ klgLt+rq ++WF+ rR k++k
  LPERR05G21380.3  60 KRVMKTPYQLEVLERTYTEDPYPNETMRADLSVKLGLTDRQLQMWFCHRRLKDRK 114
                      8999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1745114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-1752114IPR009057Homeodomain-like
PROSITE profilePS5007116.3955115IPR001356Homeobox domain
SMARTSM003891.4E-1657119IPR001356Homeobox domain
CDDcd000861.56E-1458115No hitNo description
PfamPF000461.5E-1660114IPR001356Homeobox domain
SMARTSM005715.7E-18562621IPR018501DDT domain
PROSITE profilePS5082715.714562621IPR018501DDT domain
PfamPF027917.7E-16564618IPR018501DDT domain
PfamPF050661.1E-15740807IPR007759HB1/Asxl, restriction endonuclease HTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1351 aa     Download sequence    Send to blast
MDSSGDGGDE GAGAASASAS AGKEESPPPA SASGPAPALN PAPAAVGGGA GASGSSGKVK  60
RVMKTPYQLE VLERTYTEDP YPNETMRADL SVKLGLTDRQ LQMWFCHRRL KDRKPPPKRQ  120
QLEEEVPVPV MAPPPVLPPP LPHSELTMGT AGMYGEPLPP SSSRRGSGRP SAVPRLSAPD  180
VARRYYEPPQ VMLPPMAPMQ LTRAEHRVID SVERLIGEPL RDDGPVLGVE FDPLPPGAFG  240
APIVPDQQRQ PFRSYEAKMF SGHDTKHMKA SAFLPSVDPF VPNTVTGKRK SMAGNSPHLG  300
SRAVREYQFI PEQSSDIYER TSHSRYYDVS TEASDSRMST GSRFLHGVEK APGYHGHISG  360
SSHLTLHGRP SVFPSGPTDY EMDPSNINAS SVPNEGQYGI PPVVGYENSL APSDRMVYHD  420
EDAYRIDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILN RKAEKIRQKE ELRKEKEAAR  480
QKAANERATA RRIAREYMEL MEDERLELME LVSQSKGLPS MLSLDSDTLQ QLDSFRGMLR  540
QFPSETVRLK VPFSVKPWTS TDDNIGNLLM VWKFFITFAD VLGIPSFTLD EFVQSLHDYD  600
SRLLGELHVS LLKSIIKDIE DVARTPSVAS GMTANPGGGH PQIVEGAYDW GFNILAWQRH  660
LNLLTWPEIL RQFGLSAGFG PHLKKRNAEN VNSHDDNEGR NGEDVISILR SGSAAVNAAA  720
KMKERGYTNR RRSRHRLTPG TVKFAAFHVL SLEGSKGLTI LEVAEKIQKS GLRDLTTSKT  780
PEASISAALS RDSKLFERTA PSTYCVKTPY RKDPADSEAV LAAAREKIRL FQNTISECEE  840
VEKDVDDAER DEDSECDDAD DDPDGDEVNI EEKDVKAPLV KAQDSGVSTA IYLAEETHCA  900
SCHKTFKSIH NISDHSSQCE EKQKTDPNWK MQISDNSVHI GLRLLKLLLA TIEASVPAEA  960
LEPSWTDVYR KSWGVKLYST SSTEEVFKML TILEGAIRRN FLSSDFEITT ELLNSNTQDS  1020
ASQNIAGRSG SADVLPWVPD TIAAVALRLL DLDSAISYTL QQKVVSNKER GAGEFMKLPP  1080
RYTPAKAKQE TEPLGTGTFD RQETWLTPSN GRRGRGRGGR GGSRGGRSRS RGGKVPRGIG  1140
SSPKIEFRGY SASAMPSEKA PRKYARRGRN RGRGRGLRTV RPRQPADIGA RSIPKENLLG  1200
SFSMLRNTKH TATVESPQSS GAEEWGLERR PSYAKDDEDN SVSQSDESSE EDNSEPMNEY  1260
DEQLPDYSRD NSGSSPLQMM DDGSDDNEED AEGDDGEEDG EDYDAEQHGD EDNDDAEMDE  1320
DDVEDNDDGG GGAENGDDDE DGTSYSSEYS E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21380.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212370.0AK121237.1 Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.10.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0D9WJQ00.0A0A0D9WJQ0_9ORYZ; Uncharacterized protein
STRINGLPERR05G21380.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.21e-155Homeodomain-like transcriptional regulator