PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G21380.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1792aa MW: 197726 Da PI: 5.102

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G21380.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	60	114	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r++L+ klgLt+rq ++WF+ rR k++k LPERR05G21380.2 60 KRVMKTPYQLEVLERTYTEDPYPNETMRADLSVKLGLTDRQLQMWFCHRRLKDRK 114 8999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-16	45	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-17	52	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.39	55	115	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	57	119	IPR001356	Homeobox domain
CDD	cd00086	2.28E-14	58	115	No hit	No description
Pfam	PF00046	2.0E-16	60	114	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.714	562	621	IPR018501	DDT domain
SMART	SM00571	5.7E-18	562	621	IPR018501	DDT domain
Pfam	PF02791	1.1E-15	564	618	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	740	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.5E-10	961	1003	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-12	1140	1211	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1792 aa Download sequence Send to blast
MDSSGDGGDE GAGAASASAS AGKEESPPPA SASGPAPALN PAPAAVGGGA GASGSSGKVK 60 RVMKTPYQLE VLERTYTEDP YPNETMRADL SVKLGLTDRQ LQMWFCHRRL KDRKPPPKRQ 120 QLEEEVPVPV MAPPPVLPPP LPHSELTMGT AGMYGEPLPP SSSRRGSGRP SAVPRLSAPD 180 VARRYYEPPQ VMLPPMAPMQ LTRAEHRVID SVERLIGEPL RDDGPVLGVE FDPLPPGAFG 240 APIVPDQQRQ PFRSYEAKMF SGHDTKHMKA SAFLPSVDPF VPNTVTGKRK SMAGNSPHLG 300 SRAVREYQFI PEQSSDIYER TSHSRYYDVS TEASDSRMST GSRFLHGVEK APGYHGHISG 360 SSHLTLHGRP SVFPSGPTDY EMDPSNINAS SVPNEGQYGI PPVVGYENSL APSDRMVYHD 420 EDAYRIDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILN RKAEKIRQKE ELRKEKEAAR 480 QKAANERATA RRIAREYMEL MEDERLELME LVSQSKGLPS MLSLDSDTLQ QLDSFRGMLR 540 QFPSETVRLK VPFSVKPWTS TDDNIGNLLM VWKFFITFAD VLGIPSFTLD EFVQSLHDYD 600 SRLLGELHVS LLKSIIKDIE DVARTPSVAS GMTANPGGGH PQIVEGAYDW GFNILAWQRH 660 LNLLTWPEIL RQFGLSAGFG PHLKKRNAEN VNSHDDNEGR NGEDVISILR SGSAAVNAAA 720 KMKERGYTNR RRSRHRLTPG TVKFAAFHVL SLEGSKGLTI LEVAEKIQKS GLRDLTTSKT 780 PEASISAALS RDSKLFERTA PSTYCVKTPY RKDPADSEAV LAAAREKIRL FQNTISECEE 840 VEKDVDDAER DEDSECDDAD DDPDGDEVNI EEKDVKAPLV KAQDSGVSTA VGDTNKERNS 900 VANASISPLI HTKSPESISL HTPDKSGQVH TTSDLLAEIS SDNEVAANST QDAEIDESNQ 960 GESWVQGLAE GDYCDLSVEE RLNALVALIG VATEGNSIRA VLEERLEAAS ALKKQMWAEA 1020 QLDKRRSRED FSTKMQYDSG MGLKVDVDQP NSLAESTLTP VHNLVKDNNG NGSSVKNELP 1080 VDQQSQPNAG NIVHERNGVK QEFSANPENL SAQQYVTSEK TRSQLKAYIG HKAEQLHVYR 1140 SLPLGQDRRR NRYWQFSTSA SPDDPGSARI FFESRDGYWR LIDSVEAFDA LVSSLDTRGI 1200 RESHLHSMLQ SIESTFKEAI GRKRCASIEP LAGRVLKNGT SEIISPNHSN EFGSPCSTLS 1260 GAASDSAMAY SDSFRIELGR NDVEKTAISK RADVFIKWMW KECNNHQLTS AMKHGKKRCS 1320 DLIQCCDSCY QIYLAEETHC ASCHKTFKSI HNISDHSSQC EEKQKTDPNW KMQISDNSVH 1380 IGLRLLKLLL ATIEASVPAE ALEPSWTDVY RKSWGVKLYS TSSTEEVFKM LTILEGAIRR 1440 NFLSSDFEIT TELLNSNTQD SASQNIAGRS GSADVLPWVP DTIAAVALRL LDLDSAISYT 1500 LQQKVVSNKE RGAGEFMKLP PRYTPAKAKQ ETEPLGTGTF DRQETWLTPS NGRRGRGRGG 1560 RGGSRGGRSR SRGGKVPRGI GSSPKIEFRG YSASAMPSEK APRKYARRGR NRGRGRGLRT 1620 VRPRQPADIG ARSIPKENLL GSFSMLRNTK HTATVESPQS SGAEEWGLER RPSYAKDDED 1680 NSVSQSDESS EEDNSEPMNE YDEQLPDYSR DNSGSSPLQM MDDGSDDNEE DAEGDDGEED 1740 GEDYDAEQHG DEDNDDAEMD EDDVEDNDDG GGGAENGDDD EDGTSYSSEY SE

Sequence ? help Back to Top

Protein Sequence Length: 1792 aa Download sequence Send to blast

MDSSGDGGDE GAGAASASAS AGKEESPPPA SASGPAPALN PAPAAVGGGA GASGSSGKVK  60
RVMKTPYQLE VLERTYTEDP YPNETMRADL SVKLGLTDRQ LQMWFCHRRL KDRKPPPKRQ  120
QLEEEVPVPV MAPPPVLPPP LPHSELTMGT AGMYGEPLPP SSSRRGSGRP SAVPRLSAPD  180
VARRYYEPPQ VMLPPMAPMQ LTRAEHRVID SVERLIGEPL RDDGPVLGVE FDPLPPGAFG  240
APIVPDQQRQ PFRSYEAKMF SGHDTKHMKA SAFLPSVDPF VPNTVTGKRK SMAGNSPHLG  300
SRAVREYQFI PEQSSDIYER TSHSRYYDVS TEASDSRMST GSRFLHGVEK APGYHGHISG  360
SSHLTLHGRP SVFPSGPTDY EMDPSNINAS SVPNEGQYGI PPVVGYENSL APSDRMVYHD  420
EDAYRIDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILN RKAEKIRQKE ELRKEKEAAR  480
QKAANERATA RRIAREYMEL MEDERLELME LVSQSKGLPS MLSLDSDTLQ QLDSFRGMLR  540
QFPSETVRLK VPFSVKPWTS TDDNIGNLLM VWKFFITFAD VLGIPSFTLD EFVQSLHDYD  600
SRLLGELHVS LLKSIIKDIE DVARTPSVAS GMTANPGGGH PQIVEGAYDW GFNILAWQRH  660
LNLLTWPEIL RQFGLSAGFG PHLKKRNAEN VNSHDDNEGR NGEDVISILR SGSAAVNAAA  720
KMKERGYTNR RRSRHRLTPG TVKFAAFHVL SLEGSKGLTI LEVAEKIQKS GLRDLTTSKT  780
PEASISAALS RDSKLFERTA PSTYCVKTPY RKDPADSEAV LAAAREKIRL FQNTISECEE  840
VEKDVDDAER DEDSECDDAD DDPDGDEVNI EEKDVKAPLV KAQDSGVSTA VGDTNKERNS  900
VANASISPLI HTKSPESISL HTPDKSGQVH TTSDLLAEIS SDNEVAANST QDAEIDESNQ  960
GESWVQGLAE GDYCDLSVEE RLNALVALIG VATEGNSIRA VLEERLEAAS ALKKQMWAEA  1020
QLDKRRSRED FSTKMQYDSG MGLKVDVDQP NSLAESTLTP VHNLVKDNNG NGSSVKNELP  1080
VDQQSQPNAG NIVHERNGVK QEFSANPENL SAQQYVTSEK TRSQLKAYIG HKAEQLHVYR  1140
SLPLGQDRRR NRYWQFSTSA SPDDPGSARI FFESRDGYWR LIDSVEAFDA LVSSLDTRGI  1200
RESHLHSMLQ SIESTFKEAI GRKRCASIEP LAGRVLKNGT SEIISPNHSN EFGSPCSTLS  1260
GAASDSAMAY SDSFRIELGR NDVEKTAISK RADVFIKWMW KECNNHQLTS AMKHGKKRCS  1320
DLIQCCDSCY QIYLAEETHC ASCHKTFKSI HNISDHSSQC EEKQKTDPNW KMQISDNSVH  1380
IGLRLLKLLL ATIEASVPAE ALEPSWTDVY RKSWGVKLYS TSSTEEVFKM LTILEGAIRR  1440
NFLSSDFEIT TELLNSNTQD SASQNIAGRS GSADVLPWVP DTIAAVALRL LDLDSAISYT  1500
LQQKVVSNKE RGAGEFMKLP PRYTPAKAKQ ETEPLGTGTF DRQETWLTPS NGRRGRGRGG  1560
RGGSRGGRSR SRGGKVPRGI GSSPKIEFRG YSASAMPSEK APRKYARRGR NRGRGRGLRT  1620
VRPRQPADIG ARSIPKENLL GSFSMLRNTK HTATVESPQS SGAEEWGLER RPSYAKDDED  1680
NSVSQSDESS EEDNSEPMNE YDEQLPDYSR DNSGSSPLQM MDDGSDDNEE DAEGDDGEED  1740
GEDYDAEQHG DEDNDDAEMD EDDVEDNDDG GGGAENGDDD EDGTSYSSEY SE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G21380.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121237	0.0	AK121237.1 Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639400.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D9WJP9	0.0	A0A0D9WJP9_9ORYZ; Uncharacterized protein
STRING	LPERR05G21380.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator