PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G21380.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1847aa MW: 205166 Da PI: 5.2615

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G21380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1.1e-18	60	114	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r++L+ klgLt+rq ++WF+ rR k++k LPERR05G21380.1 60 KRVMKTPYQLEVLERTYTEDPYPNETMRADLSVKLGLTDRQLQMWFCHRRLKDRK 114 8999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-16	45	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-17	52	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.39	55	115	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	57	119	IPR001356	Homeobox domain
CDD	cd00086	4.84E-14	58	115	No hit	No description
Pfam	PF00046	2.1E-16	60	114	IPR001356	Homeobox domain
SMART	SM00571	5.7E-18	617	676	IPR018501	DDT domain
PROSITE profile	PS50827	15.714	617	676	IPR018501	DDT domain
Pfam	PF02791	1.1E-15	619	673	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	795	862	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.7E-10	1016	1058	IPR028942	WHIM1 domain
Pfam	PF15613	1.9E-12	1195	1266	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1847 aa Download sequence Send to blast
MDSSGDGGDE GAGAASASAS AGKEESPPPA SASGPAPALN PAPAAVGGGA GASGSSGKVK 60 RVMKTPYQLE VLERTYTEDP YPNETMRADL SVKLGLTDRQ LQMWFCHRRL KDRKPPPKRQ 120 QLEEEVPVPV MAPPPVLPPP LPHSELTMGT AGMYGEPLPP SSSRRGSGRP SAVPRLSAPD 180 VARRYYEPPQ VMLPPMAPMQ LTRAEHRVID SVERLIGEPL RDDGPVLGVE FDPLPPGAFG 240 APIVPDQQRQ PFRSYEAKMF SGHDTKHMKA SAFLPSVDPF VPNTVTGKRK SMAGNSPHLG 300 SRAVREYQFI PEQSSDIYER TSHSRYYDVS TEASDSRMST GSRFLHGVEK APGYHGHISG 360 SSHLTLHGRP SVFPSGPTDY EMDPSNINAS SVPNEGQYGI PPVVGYENSL APSDRMVYHD 420 EDAYRIDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILN RKREEQMRRE MERNDRERRK 480 EEERLLREKQ REEERFQREQ RREHKRMEKY LLKQSLRAEK IRQKEELRKE KEAARQKAAN 540 ERATARRIAR EYMELMEDER LELMELVSQS KGLPSMLSLD SDTLQQLDSF RGMLRQFPSE 600 TVRLKVPFSV KPWTSTDDNI GNLLMVWKFF ITFADVLGIP SFTLDEFVQS LHDYDSRLLG 660 ELHVSLLKSI IKDIEDVART PSVASGMTAN PGGGHPQIVE GAYDWGFNIL AWQRHLNLLT 720 WPEILRQFGL SAGFGPHLKK RNAENVNSHD DNEGRNGEDV ISILRSGSAA VNAAAKMKER 780 GYTNRRRSRH RLTPGTVKFA AFHVLSLEGS KGLTILEVAE KIQKSGLRDL TTSKTPEASI 840 SAALSRDSKL FERTAPSTYC VKTPYRKDPA DSEAVLAAAR EKIRLFQNTI SECEEVEKDV 900 DDAERDEDSE CDDADDDPDG DEVNIEEKDV KAPLVKAQDS GVSTAVGDTN KERNSVANAS 960 ISPLIHTKSP ESISLHTPDK SGQVHTTSDL LAEISSDNEV AANSTQDAEI DESNQGESWV 1020 QGLAEGDYCD LSVEERLNAL VALIGVATEG NSIRAVLEER LEAASALKKQ MWAEAQLDKR 1080 RSREDFSTKM QYDSGMGLKV DVDQPNSLAE STLTPVHNLV KDNNGNGSSV KNELPVDQQS 1140 QPNAGNIVHE RNGVKQEFSA NPENLSAQQY VTSEKTRSQL KAYIGHKAEQ LHVYRSLPLG 1200 QDRRRNRYWQ FSTSASPDDP GSARIFFESR DGYWRLIDSV EAFDALVSSL DTRGIRESHL 1260 HSMLQSIEST FKEAIGRKRC ASIEPLAGRV LKNGTSEIIS PNHSNEFGSP CSTLSGAASD 1320 SAMAYSDSFR IELGRNDVEK TAISKRADVF IKWMWKECNN HQLTSAMKHG KKRCSDLIQC 1380 CDSCYQIYLA EETHCASCHK TFKSIHNISD HSSQCEEKQK TDPNWKMQIS DNSVHIGLRL 1440 LKLLLATIEA SVPAEALEPS WTDVYRKSWG VKLYSTSSTE EVFKMLTILE GAIRRNFLSS 1500 DFEITTELLN SNTQDSASQN IAGRSGSADV LPWVPDTIAA VALRLLDLDS AISYTLQQKV 1560 VSNKERGAGE FMKLPPRYTP AKAKQETEPL GTGTFDRQET WLTPSNGRRG RGRGGRGGSR 1620 GGRSRSRGGK VPRGIGSSPK IEFRGYSASA MPSEKAPRKY ARRGRNRGRG RGLRTVRPRQ 1680 PADIGARSIP KENLLGSFSM LRNTKHTATV ESPQSSGAEE WGLERRPSYA KDDEDNSVSQ 1740 SDESSEEDNS EPMNEYDEQL PDYSRDNSGS SPLQMMDDGS DDNEEDAEGD DGEEDGEDYD 1800 AEQHGDEDND DAEMDEDDVE DNDDGGGGAE NGDDDEDGTS YSSEYSE

Sequence ? help Back to Top

Protein Sequence Length: 1847 aa Download sequence Send to blast

MDSSGDGGDE GAGAASASAS AGKEESPPPA SASGPAPALN PAPAAVGGGA GASGSSGKVK  60
RVMKTPYQLE VLERTYTEDP YPNETMRADL SVKLGLTDRQ LQMWFCHRRL KDRKPPPKRQ  120
QLEEEVPVPV MAPPPVLPPP LPHSELTMGT AGMYGEPLPP SSSRRGSGRP SAVPRLSAPD  180
VARRYYEPPQ VMLPPMAPMQ LTRAEHRVID SVERLIGEPL RDDGPVLGVE FDPLPPGAFG  240
APIVPDQQRQ PFRSYEAKMF SGHDTKHMKA SAFLPSVDPF VPNTVTGKRK SMAGNSPHLG  300
SRAVREYQFI PEQSSDIYER TSHSRYYDVS TEASDSRMST GSRFLHGVEK APGYHGHISG  360
SSHLTLHGRP SVFPSGPTDY EMDPSNINAS SVPNEGQYGI PPVVGYENSL APSDRMVYHD  420
EDAYRIDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILN RKREEQMRRE MERNDRERRK  480
EEERLLREKQ REEERFQREQ RREHKRMEKY LLKQSLRAEK IRQKEELRKE KEAARQKAAN  540
ERATARRIAR EYMELMEDER LELMELVSQS KGLPSMLSLD SDTLQQLDSF RGMLRQFPSE  600
TVRLKVPFSV KPWTSTDDNI GNLLMVWKFF ITFADVLGIP SFTLDEFVQS LHDYDSRLLG  660
ELHVSLLKSI IKDIEDVART PSVASGMTAN PGGGHPQIVE GAYDWGFNIL AWQRHLNLLT  720
WPEILRQFGL SAGFGPHLKK RNAENVNSHD DNEGRNGEDV ISILRSGSAA VNAAAKMKER  780
GYTNRRRSRH RLTPGTVKFA AFHVLSLEGS KGLTILEVAE KIQKSGLRDL TTSKTPEASI  840
SAALSRDSKL FERTAPSTYC VKTPYRKDPA DSEAVLAAAR EKIRLFQNTI SECEEVEKDV  900
DDAERDEDSE CDDADDDPDG DEVNIEEKDV KAPLVKAQDS GVSTAVGDTN KERNSVANAS  960
ISPLIHTKSP ESISLHTPDK SGQVHTTSDL LAEISSDNEV AANSTQDAEI DESNQGESWV  1020
QGLAEGDYCD LSVEERLNAL VALIGVATEG NSIRAVLEER LEAASALKKQ MWAEAQLDKR  1080
RSREDFSTKM QYDSGMGLKV DVDQPNSLAE STLTPVHNLV KDNNGNGSSV KNELPVDQQS  1140
QPNAGNIVHE RNGVKQEFSA NPENLSAQQY VTSEKTRSQL KAYIGHKAEQ LHVYRSLPLG  1200
QDRRRNRYWQ FSTSASPDDP GSARIFFESR DGYWRLIDSV EAFDALVSSL DTRGIRESHL  1260
HSMLQSIEST FKEAIGRKRC ASIEPLAGRV LKNGTSEIIS PNHSNEFGSP CSTLSGAASD  1320
SAMAYSDSFR IELGRNDVEK TAISKRADVF IKWMWKECNN HQLTSAMKHG KKRCSDLIQC  1380
CDSCYQIYLA EETHCASCHK TFKSIHNISD HSSQCEEKQK TDPNWKMQIS DNSVHIGLRL  1440
LKLLLATIEA SVPAEALEPS WTDVYRKSWG VKLYSTSSTE EVFKMLTILE GAIRRNFLSS  1500
DFEITTELLN SNTQDSASQN IAGRSGSADV LPWVPDTIAA VALRLLDLDS AISYTLQQKV  1560
VSNKERGAGE FMKLPPRYTP AKAKQETEPL GTGTFDRQET WLTPSNGRRG RGRGGRGGSR  1620
GGRSRSRGGK VPRGIGSSPK IEFRGYSASA MPSEKAPRKY ARRGRNRGRG RGLRTVRPRQ  1680
PADIGARSIP KENLLGSFSM LRNTKHTATV ESPQSSGAEE WGLERRPSYA KDDEDNSVSQ  1740
SDESSEEDNS EPMNEYDEQL PDYSRDNSGS SPLQMMDDGS DDNEEDAEGD DGEEDGEDYD  1800
AEQHGDEDND DAEMDEDDVE DNDDGGGGAE NGDDDEDGTS YSSEYSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G21380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121237	0.0	AK121237.1 Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639400.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D9WJP8	0.0	A0A0D9WJP8_9ORYZ; Uncharacterized protein
STRING	LPERR05G21380.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator