PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G20870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 30392.3 Da PI: 7.2596 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+ +G g +W + +++ g++R++k+c++rw++yl LPERR05G20870.1 14 RGPWSPEEDEQLRSYVHSHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 35.9 | 1.7e-11 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T +Ed ++ + + G++ W+ Ia++++ gRt++++k++w++ LPERR05G20870.1 71 YTDQEDHIICTLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 699****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.077 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-9 | 16 | 62 | No hit | No description |
SMART | SM00717 | 8.5E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.695 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.6E-10 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVH SHGIGGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTDQEDHIIC TLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGA 120 THAQPRVATP PPGQCTSSPA PSLSPASSSV TSSSGDACSF AATNTIYPPA APASQLIRFD 180 AQPLPPASQT EFAAPVPLND GGVLSLDDVF LSELTAGEPL FPYAELFSGF ADLPLPVPVV 240 PEKAAAMELS ACYFPNMAEI WAASDHSHGH GHAKPHGLYN TLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G20870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108452 | 1e-167 | AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637875.1 | 1e-129 | transcription factor RAX2 | ||||
TrEMBL | A0A0D9WJH3 | 0.0 | A0A0D9WJH3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G20870.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-69 | myb domain protein 36 |